sample_name abx abx_exposure abx_units age age_units anonymized_name any_formula any_mbm any_mbm_dc apgar_5min avg_hero_score batch betamethasone birth_ga_d birth_ga_d_units birth_ga_w birth_ga_w_units birth_head_cir birth_head_cir_units birth_length birth_length_units birth_weight birth_weight_units bmi bmi_units bmz body_habitat body_product body_site cal_oz clin_chorio collection_time collection_timestamp comorbid1 comorbid2 comorbid3 comorbid4 comorbid5 date_of_disch day_14_head_cir_wdn day_14_head_cir_wdn_units day_14_length_wdn day_14_length_wdn_units day_14_weight_wdn day_14_weight_wdn_units dc_newborn dc_supp_only dc_wt dc_wt_units delivery_mode description dhm_wk1 dhm_wk1_units disch_ga_d disch_ga_d_units disch_ga_w disch_ga_w_units dna_extracted dob dol_1stformula dol_1stformula_units dol_first_feeding dol_fullfeed_dc dol_fullfeed_dc_units dol_returnbw dol_returnbw_units dol_tf120 dol_tf120_units dol_wtgain dol_wtgain_units elevation emesis_wk1 env_biome env_feature env_material env_package final_7_d formula_wk1 formula_wk1_units fortified gbs_status geo_loc_name grade gravida headcir_36wpma headcir_36wpma_units headcir_disch headcir_disch_units high_hero_score highest_cal highest_cal_units hm_only_wk1 hm_only_wk1_units host_age host_age_units host_life_stage host_scientific_name host_subject_id host_taxid hr_1stfeed hr_1stfeed_units idm infection ivf_days ivf_days_units ivh latitude length_36wpma length_36wpma_units length_disch length_disch_units longitude los los_units maternal_age maternal_age_units maternal_amox maternal_amox_units maternal_amp maternal_amp_units maternal_ancef maternal_ancef_units maternal_azithro maternal_azithro_units maternal_chorio maternal_clinda maternal_clinda_units maternal_education maternal_gent maternal_gent_units maternal_pcn maternal_pcn_units maternal_race mbm_wk1 mbm_wk1_units ml_dhm_wk1 ml_dhm_wk1_units ml_formula_wk1 ml_formula_wk1_units ml_mbm_wk1 ml_mbm_wk1_units ms_filename ms_filename_noext ms_notes ms_plate_num ms_run_order ms_sample_type multiple nadir_wt nadir_wt_units nec_class ngfeeds nutrition_disch oxygen_req para pct_bw_lost pct_dc_wt_abovebw pct_formula_wk1 pda phototx physical_specimen_location physical_specimen_remaining pprom qiita_study_id randomization reachtf120 residual_wk1 resp_support rop sample_1st sample_1st_with_feeding sample_discharge sample_type sample_updated_by scientific_name sepsis sepsis_clinical sepsis_early sepsis_late sex sex_infant sin_mul sip surfactant taxon_id time_only_bm time_only_bm_units time_resp_support time_resp_support_units title tx_newborn type_feed_discharge type_first_feeding type_of_feed type_of_feed_7_d weight_36wpma weight_disch weight_units #q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical 11712.SUBJECT10.ORAL.30 0 No days 1 days SUBJECT10.ORAL.30 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.30 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 1 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL not_used 11712.SUBJECT10.ORAL.30 didn't inject 14 14327 not_used Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.38 0 No days 1 days SUBJECT10.SKIN.38 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.38 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 1 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.38.mzXML 11712.SUBJECT10.SKIN.38 not applicable 11 16861 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.ORAL.53 0 No days 1 days SUBJECT11.ORAL.53 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.ORAL.53 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 1 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL not_used 11712.SUBJECT11.ORAL.53 no TIC 14 14344 not_used Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.SKIN.57 0 No days 1 days SUBJECT11.SKIN.57 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.SKIN.57 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 1 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.SKIN.57.mzXML 11712.SUBJECT11.SKIN.57 not applicable 11 16831 skin Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.64 0 No days 1 days SUBJECT12.ORAL.64 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.64 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 1 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.64.mzXML 11712.SUBJECT12.ORAL.64 not applicable 1 13375 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.79 0 No days 1 days SUBJECT12.SKIN.79 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.79 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 1 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.79.mzXML 11712.SUBJECT12.SKIN.79 not applicable 12 16968 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.ORAL.108 0 No days 1 days SUBJECT13.ORAL.108 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.ORAL.108 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 1 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.ORAL.108.mzXML 11712.SUBJECT13.ORAL.108 not applicable 14 14385 oral Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.SKIN.111 0 No days 1 days SUBJECT13.SKIN.111 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.SKIN.111 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 1 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.SKIN.111.mzXML 11712.SUBJECT13.SKIN.111 not applicable 11 16836 skin Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.STOOL.114 0 No days 1 days SUBJECT13.STOOL.114 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.STOOL.114 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 1 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.STOOL.114.mzXML 11712.SUBJECT13.STOOL.114 not applicable 7 14134 fecal Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.117 0 No days 1 days SUBJECT14.ORAL.117 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.117 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 1 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.117.mzXML 11712.SUBJECT14.ORAL.117 not applicable 14 14390 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.126 0 No days 1 days SUBJECT14.SKIN.126 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.126 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 1 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.126.mzXML 11712.SUBJECT14.SKIN.126 not applicable 11 16882 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.136 0 No days 1 days SUBJECT14.STOOL.136 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.136 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 1 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.136.mzXML 11712.SUBJECT14.STOOL.136 not applicable 7 14141 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.ORAL.145 0 No days 1 days SUBJECT15.ORAL.145 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.ORAL.145 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 1 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.ORAL.145.mzXML 11712.SUBJECT15.ORAL.145 not applicable 2 13465 oral Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.SKIN.148 0 No days 1 days SUBJECT15.SKIN.148 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.SKIN.148 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 1 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.SKIN.148.mzXML 11712.SUBJECT15.SKIN.148 not applicable 10 16770 skin Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.153 0 No days 1 days SUBJECT16.ORAL.153 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.153 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 1 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.153.mzXML 11712.SUBJECT16.ORAL.153 not applicable 8 13847 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.170 0 No days 1 days SUBJECT16.SKIN.170 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.170 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 1 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.170.mzXML 11712.SUBJECT16.SKIN.170 not applicable 15 17102 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.202 7 Yes days 1 days SUBJECT17.ORAL.202 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.202 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 1 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.204.B.mzXML 11712.SUBJECT17.ORAL.204.B "Was a duplicate, verified which sample is which" 2 13508 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.224 7 Yes days 1 days SUBJECT17.SKIN.224 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.224 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 1 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.224.mzXML 11712.SUBJECT17.SKIN.224 not applicable 10 16775 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.246 7 Yes days 1 days SUBJECT17.STOOL.246 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.246 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 1 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.246.mzXML 11712.SUBJECT17.STOOL.246 not applicable 6 14185 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.269 2 Yes days 1 days SUBJECT18.ORAL.269 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.269 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 1 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.269.mzXML 11712.SUBJECT18.ORAL.269 not applicable 1 13457 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.291 2 Yes days 1 days SUBJECT18.SKIN.291 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.291 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 1 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.291.mzXML 11712.SUBJECT18.SKIN.291 not applicable 10 16788 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.313 2 Yes days 1 days SUBJECT18.STOOL.313 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.313 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 1 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL not_used 11712.SUBJECT18.STOOL.313 didn't inject 6 14189 not_used Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.334 0 No days 1 days SUBJECT19.ORAL.334 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.334 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL not_used 11712.SUBJECT19.ORAL.334 didn't inject 8 13842 not_used Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.349 0 No days 1 days SUBJECT19.SKIN.349 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.349 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.349.mzXML 11712.SUBJECT19.SKIN.349 not applicable 15 17047 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.364 0 No days 1 days SUBJECT19.STOOL.364 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.364 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.364.mzXML 11712.SUBJECT19.STOOL.364 not applicable 3 14049 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT2.ORAL.379 0 No days 1 days SUBJECT2.ORAL.379 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.ORAL.379 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 1 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.ORAL.379.mzXML 11712.SUBJECT2.ORAL.379 not applicable 14 14377 oral Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.SKIN.383 0 No days 1 days SUBJECT2.SKIN.383 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.SKIN.383 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 1 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.SKIN.383.mzXML 11712.SUBJECT2.SKIN.383 not applicable 11 16914 skin Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.STOOL.387 0 No days 1 days SUBJECT2.STOOL.387 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.STOOL.387 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 1 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.STOOL.387.mzXML 11712.SUBJECT2.STOOL.387 not applicable 7 14106 fecal Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.391 0 No days 1 days SUBJECT20.ORAL.391 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.391 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.391.mzXML 11712.SUBJECT20.ORAL.391 not applicable 8 13794 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.406 0 No days 1 days SUBJECT20.SKIN.406 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.406 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.406.mzXML 11712.SUBJECT20.SKIN.406 not applicable 13 17156 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.420 0 No days 1 days SUBJECT20.STOOL.420 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.420 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.420.mzXML 11712.SUBJECT20.STOOL.420 not applicable 3 14024 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.436 7 Yes days 1 days SUBJECT21.ORAL.436 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.436 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 1 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL not_used 11712.SUBJECT21.ORAL.436 may have injected too little; tiny signal 1 13425 not_used Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.446 7 Yes days 1 days SUBJECT21.SKIN.446 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.446 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 1 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.446.mzXML 11712.SUBJECT21.SKIN.446 not applicable 15 17095 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.456 7 Yes days 1 days SUBJECT21.STOOL.456 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.456 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 1 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.456.mzXML 11712.SUBJECT21.STOOL.456 not applicable 6 14210 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.ORAL.466 0 No days 1 days SUBJECT22.ORAL.466 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 22:29:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.ORAL.466 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 1 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.ORAL.466.mzXML 11712.SUBJECT22.ORAL.466 not applicable 8 13837 oral Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.SKIN.471 0 No days 1 days SUBJECT22.SKIN.471 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 22:29:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.SKIN.471 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 1 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL not_used 11712.SUBJECT22.SKIN.471 didn't inject 15 17097 not_used Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.480 0 No days 1 days SUBJECT23.ORAL.480 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.480 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 1 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.480.mzXML 11712.SUBJECT23.ORAL.480 not applicable 8 13845 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.489 0 No days 1 days SUBJECT23.SKIN.489 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.489 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 1 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.SKIN.489.mzXML 11712.SUBJECT23.SKIN.489 not applicable 15 17052 skin Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.498 0 No days 1 days SUBJECT23.STOOL.498 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.498 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 1 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.498.mzXML 11712.SUBJECT23.STOOL.498 not applicable 3 14014 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.507 0 No days 1 days SUBJECT24.ORAL.507 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:43:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.507 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 1 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not_used 11712.SUBJECT24.ORAL.507 "injected, just not a lot of signal" 8 13864 not_used Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.514 0 No days 1 days SUBJECT24.SKIN.514 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:43:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.514 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 1 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.521 0 No days 1 days SUBJECT24.STOOL.521 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:43:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.521 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 1 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.521.mzXML 11712.SUBJECT24.STOOL.521 not applicable 3 14000 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.528 0 No days 1 days SUBJECT25.ORAL.528 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.528 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 1 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.528.mzXML 11712.SUBJECT25.ORAL.528 not applicable 8 13878 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.537 0 No days 1 days SUBJECT25.SKIN.537 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.537 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 1 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.546 0 No days 1 days SUBJECT25.STOOL.546 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.546 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 1 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.546.mzXML 11712.SUBJECT25.STOOL.546 not applicable 4 13595 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.555 3 Yes days 1 days SUBJECT26.ORAL.555 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.555 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 1 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.555.mzXML 11712.SUBJECT26.ORAL.555 not applicable 9 13891 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.561 3 Yes days 1 days SUBJECT26.SKIN.561 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.561 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 1 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.561.mzXML 11712.SUBJECT26.SKIN.561 not applicable 13 17198 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.567 3 Yes days 1 days SUBJECT26.STOOL.567 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.567 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 1 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.567.mzXML 11712.SUBJECT26.STOOL.567 not applicable 4 13582 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.ORAL.573 0 No days 1 days SUBJECT27.ORAL.573 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.ORAL.573 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 1 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.ORAL.573.mzXML 11712.SUBJECT27.ORAL.573 not applicable 8 13814 oral Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.SKIN.577 0 No days 1 days SUBJECT27.SKIN.577 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.SKIN.577 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 1 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.584 0 No days 1 days SUBJECT28.ORAL.584 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.584 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 1 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.ORAL.584.mzXML 11712.SUBJECT28.ORAL.584 not applicable 2 13546 oral Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.592 0 No days 1 days SUBJECT28.SKIN.592 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.592 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 1 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.592.mzXML 11712.SUBJECT28.SKIN.592 not applicable 10 16738 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.1237.A 0 No days 1 days SUBJECT28.STOOL.1237.A Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.1237.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 2 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.1237.A.mzXML 11712.SUBJECT28.STOOL.1237.A true duplicate 6 14191 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.1237.B 0 No days 1 days SUBJECT28.STOOL.1237.B Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.1237.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 2 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.1237.B.mzXML 11712.SUBJECT28.STOOL.1237.B true duplicate 5 13718 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.ORAL.607 2 Yes days 1 days SUBJECT29.ORAL.607 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:21:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.ORAL.607 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 1 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.ORAL.607.mzXML 11712.SUBJECT29.ORAL.607 not applicable 8 13876 oral Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.SKIN.612 2 Yes days 1 days SUBJECT29.SKIN.612 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:21:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.SKIN.612 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 1 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.620 0 No days 1 days SUBJECT3.ORAL.620 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.620 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 1 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.620.mzXML 11712.SUBJECT3.ORAL.620 not applicable 14 14410 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.628 0 No days 1 days SUBJECT3.SKIN.628 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.628 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 1 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.628.mzXML 11712.SUBJECT3.SKIN.628 not applicable 11 16853 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.654 2 Yes days 1 days SUBJECT30.ORAL.654 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 22:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.654 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 1 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.654.mzXML 11712.SUBJECT30.ORAL.654 not applicable 9 13904 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.671 2 Yes days 1 days SUBJECT30.SKIN.671 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 22:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.671 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 1 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.671.mzXML 11712.SUBJECT30.SKIN.671 not applicable 13 17197 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.698 2 Yes days 1 days SUBJECT31.ORAL.698 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.698 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 1 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.698.mzXML 11712.SUBJECT31.ORAL.698 not applicable 14 14343 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2133 2 Yes days 1 days SUBJECT31.SKIN.2133 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2133 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 1 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2133.mzXML 11712.SUBJECT31.SKIN.2133 not applicable 11 16833 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.ORAL.711 0 No days 1 days SUBJECT32.ORAL.711 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.ORAL.711 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 1 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.ORAL.711.mzXML 11712.SUBJECT32.ORAL.711 not applicable 1 13411 oral Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.SKIN.715 0 No days 1 days SUBJECT32.SKIN.715 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.SKIN.715 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 1 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.SKIN.715.mzXML 11712.SUBJECT32.SKIN.715 not applicable 12 17024 skin Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.STOOL.719 0 No days 1 days SUBJECT32.STOOL.719 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.STOOL.719 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 1 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.STOOL.719.mzXML 11712.SUBJECT32.STOOL.719 not applicable 5 13713 fecal Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.ORAL.723 2 Yes days 1 days SUBJECT33.ORAL.723 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.ORAL.723 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral No 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 1 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT35.SKIN.1265.mzXML 11712.SUBJECT33.ORAL.1265 "MS filename was misnamed, does match this sample." 1 13420 oral Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.SKIN.725 2 Yes days 1 days SUBJECT33.SKIN.725 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.SKIN.725 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin No 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 1 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT33.SKIN.725.mzXML 11712.SUBJECT33.SKIN.725 not applicable 12 16962 skin Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.STOOL.727 2 Yes days 1 days SUBJECT33.STOOL.727 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.STOOL.727 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut No 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 1 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT33.STOOL.727.mzXML 11712.SUBJECT33.STOOL.727 not applicable 5 13700 fecal Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.770 2 Yes days 1 days SUBJECT36.ORAL.770 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.770 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 1 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.770.mzXML 11712.SUBJECT36.ORAL.770 not applicable 1 13379 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.776 2 Yes days 1 days SUBJECT36.SKIN.776 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.776 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 1 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.776.mzXML 11712.SUBJECT36.SKIN.776 not applicable 12 16971 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.782 2 Yes days 1 days SUBJECT36.STOOL.782 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.782 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 1 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.STOOL.782.mzXML 11712.SUBJECT36.STOOL.782 not applicable 5 13747 fecal Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.788 2 Yes days 1 days SUBJECT37.ORAL.788 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.788 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 1 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.788.mzXML 11712.SUBJECT37.ORAL.788 not applicable 2 13472 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.794 2 Yes days 1 days SUBJECT37.SKIN.794 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.794 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 1 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.794.mzXML 11712.SUBJECT37.SKIN.794 not applicable 12 16981 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.840 0 No days 1 days SUBJECT4.ORAL.840 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.840 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 1 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.840.mzXML 11712.SUBJECT4.ORAL.840 not applicable 14 14351 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.850 0 No days 1 days SUBJECT4.SKIN.850 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.850 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 1 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.850.mzXML 11712.SUBJECT4.SKIN.850 not applicable 11 16868 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.861 0 No days 1 days SUBJECT4.STOOL.861 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.861 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 1 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.861.mzXML 11712.SUBJECT4.STOOL.861 not applicable 6 14229 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.881 5 Yes days 1 days SUBJECT40.ORAL.881 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:48:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.881 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.881.mzXML 11712.SUBJECT40.ORAL.881 not applicable 1 13429 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.901 5 Yes days 1 days SUBJECT40.SKIN.901 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:48:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.901 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 1 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.901.mzXML 11712.SUBJECT40.SKIN.901 not applicable 12 17022 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.944 0 No days 1 days SUBJECT41.ORAL.944 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.944 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 1 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.944.mzXML 11712.SUBJECT41.ORAL.944 not applicable 2 13525 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.960 0 No days 1 days SUBJECT41.SKIN.960 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.960 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 1 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.960.mzXML 11712.SUBJECT41.SKIN.960 not applicable 12 16952 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.976 0 No days 1 days SUBJECT41.STOOL.976 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.976 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 1 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.976.mzXML 11712.SUBJECT41.STOOL.976 not applicable 4 13636 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.993 0 No days 1 days SUBJECT42.ORAL.993 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.993 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 1 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.993.mzXML 11712.SUBJECT42.ORAL.993 not applicable 2 13536 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1009 0 No days 1 days SUBJECT42.SKIN.1009 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1009 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 1 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1009.mzXML 11712.SUBJECT42.SKIN.1009 not applicable 10 16754 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1039 5 Yes days 1 days SUBJECT43.ORAL.1039 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1039 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 1 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1039.mzXML 11712.SUBJECT43.ORAL.1039 not applicable 2 13559 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1059 5 Yes days 1 days SUBJECT43.SKIN.1059 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1059 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 1 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1059.mzXML 11712.SUBJECT43.SKIN.1059 not applicable 10 16781 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1079 5 Yes days 1 days SUBJECT43.STOOL.1079 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1079 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 1 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1079.mzXML 11712.SUBJECT43.STOOL.1079 not applicable 5 13753 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT46.STOOL.1243 0 No days 1 days SUBJECT46.STOOL.1243 No Yes Yes 9 0.33 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2805 grams 11.93 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:25:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2610 grams c-section SUBJECT46.STOOL.1243 25.36287242 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 4 days not applicable days 4 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 72.72727273 mL/kg/day 1 days neonate Homo sapiens 11712-46 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 43 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 47.36440031 mL/kg/day 498 mL 0 mL 930 mL 11712.SUBJECT46.STOOL.1243.mzXML 11712.SUBJECT46.STOOL.1243 not applicable 16 14288 fecal Singleton 2540 grams missing: not collected No Donor human milk No missing: not collected 9.44741533 -6.951871658 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT48.STOOL.1249 0 No days 1 days SUBJECT48.STOOL.1249 No Yes Yes 8 0.38 2 missing: not collected 6 days 35 weeks missing: not collected not applicable 50 cm 2890 grams 11.56 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2730 grams c-section SUBJECT48.STOOL.1249 25.60553633 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.85 20 Calories per ounce 40.83044983 mL/kg/day 1 days neonate Homo sapiens 11712-48 9606 20 hours Yes No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 6 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses Hispanic 15.22491349 mL/kg/day 444 mL 0 mL 264 mL 11712.SUBJECT48.STOOL.1249.mzXML 11712.SUBJECT48.STOOL.1249 not applicable 16 14295 fecal Singleton 2690 grams missing: not collected No Donor human milk No missing: not collected 6.920415225 -5.53633218 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected not applicable not applicable 11712.SUBJECT49.STOOL.1252 0 No days 1 days SUBJECT49.STOOL.1252 No Yes Yes 8 0.25 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2405 grams 10.22 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2320 grams c-section SUBJECT49.STOOL.1252 32.84823285 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.28 20 Calories per ounce 52.05821206 mL/kg/day 1 days neonate Homo sapiens 11712-49 9606 9 hours No No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 3 doses Black 19.20997921 mL/kg/day 395 mL 0 mL 231 mL 11712.SUBJECT49.STOOL.1252.mzXML 11712.SUBJECT49.STOOL.1252 not applicable 16 14277 fecal Singleton 2280 grams missing: not collected No Donor human milk No missing: not collected 5.197505198 -3.534303534 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT5.ORAL.1083 0 No days 1 days SUBJECT5.ORAL.1083 Yes Yes Yes 9 0.25 1 missing: not collected 5 days 35 weeks missing: not collected not applicable 51 cm 3265 g 12.55 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:49:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3115 grams c-section SUBJECT5.ORAL.1083 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 31.39356815 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.64 20 Calories per ounce 3.062787136 mL/kg/day 1 days neonate Homo sapiens 11712-5 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 28 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 1 doses latino 3.062787136 mL/kg/day 0 mL 410 mL 40 mL 11712.SUBJECT5.ORAL.1083.mzXML 11712.SUBJECT5.ORAL.1083 not applicable 5 13690 oral Singleton 3105 grams missing: not collected No Formula No missing: not collected 4.900459418 -4.594180704 91.11111111 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT5.SKIN.1085 0 No days 1 days SUBJECT5.SKIN.1085 Yes Yes Yes 9 0.25 1 missing: not collected 5 days 35 weeks missing: not collected not applicable 51 cm 3265 g 12.55 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:49:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3115 grams c-section SUBJECT5.SKIN.1085 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 31.39356815 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.64 20 Calories per ounce 3.062787136 mL/kg/day 1 days neonate Homo sapiens 11712-5 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 28 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 1 doses latino 3.062787136 mL/kg/day 0 mL 410 mL 40 mL 11712.SUBJECT5.SKIN.1085.mzXML 11712.SUBJECT5.SKIN.1085 not applicable 11 16903 skin Singleton 3105 grams missing: not collected No Formula No missing: not collected 4.900459418 -4.594180704 91.11111111 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT50.STOOL.1255 0 No days 1 days SUBJECT50.STOOL.1255 Yes Yes Yes 9 not applicable 2 missing: not collected 6 days 35 weeks missing: not collected not applicable 46.5 cm 2225 grams 10.29 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2120 grams vaginal SUBJECT50.STOOL.1255 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0.898876404 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 19.59550562 mL/kg/day 1 days neonate Homo sapiens 11712-50 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 19.59550562 mL/kg/day 0 mL 10 mL 218 mL 11712.SUBJECT50.STOOL.1255.mzXML 11712.SUBJECT50.STOOL.1255 not applicable 16 14305 fecal Twin 2100 grams missing: not collected No Formula No missing: not collected 5.617977528 -4.719101124 4.385964912 missing: not collected No RCHSD Yes No 11712 Formula No not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT51.STOOL.1258 0 No days 1 days SUBJECT51.STOOL.1258 Yes Yes Yes 9 0.21 2 missing: not collected 4 days 34 weeks missing: not collected not applicable 46.5 cm 2540 grams 11.75 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2415 grams vaginal SUBJECT51.STOOL.1258 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 27.61529809 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 20 Calories per ounce 76.60292463 mL/kg/day 1 days neonate Homo sapiens 11712-51 9606 1 hours No No 1 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 3 doses "White, non-hispanic" 76.60292463 mL/kg/day 0 mL 491 mL 1362 mL 11712.SUBJECT51.STOOL.1258.mzXML 11712.SUBJECT51.STOOL.1258 not applicable 16 14293 fecal Singleton 2350 grams missing: not collected No Formula No missing: not collected 7.480314961 -4.921259843 26.49757151 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT52.STOOL.1261 0 No days 1 days SUBJECT52.STOOL.1261 No Yes Yes 9 0.1 2 missing: not collected 5 days 35 weeks missing: not collected not applicable 52 cm 3365 grams 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:23:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 3080 grams c-section SUBJECT52.STOOL.1261 27.51857355 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.11 20 Calories per ounce 38.75185736 mL/kg/day 1 days neonate Homo sapiens 11712-52 9606 5 hours Yes No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 31 years 0 doses 0 doses 1 doses 1 doses No 0 doses Graduate school 0 doses 0 doses "White, non-hispanic" 11.2332838 mL/kg/day 463 mL 0 mL 189 mL 11712.SUBJECT52.STOOL.1261.mzXML 11712.SUBJECT52.STOOL.1261 not applicable 16 14304 fecal Singleton 3060 grams missing: not collected No Donor human milk No missing: not collected 9.063893016 -8.469539376 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT53.STOOL.1263 2 Yes days 1 days SUBJECT53.STOOL.1263 No Yes Yes 8 0.2 2 missing: not collected 1 days 35 weeks missing: not collected not applicable 49.5 cm 2360 grams 9.63 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Not applicable 2310 grams vaginal SUBJECT53.STOOL.1263 53.4503632 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.26 22 Calories per ounce 81.23486683 mL/kg/day 1 days neonate Homo sapiens 11712-53 9606 7 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 29 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Hispanic 27.78450363 mL/kg/day 883 mL 0 mL 459 mL 11712.SUBJECT53.STOOL.1263.mzXML 11712.SUBJECT53.STOOL.1263 not applicable 16 14268 fecal Singleton 2245 grams missing: not collected No Donor human milk No missing: not collected 4.872881356 -2.118644068 0 missing: not collected No RCHSD Yes Yes 11712 Donor human milk Yes not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT54.STOOL.1266 0 No days 1 days SUBJECT54.STOOL.1266 Yes Yes No 9 0.56 2 missing: not collected 0 days 35 weeks missing: not collected not applicable 48 cm 2675 grams 11.61 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2460 grams c-section SUBJECT54.STOOL.1266 56.76902537 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 5 days 105 3 urban biome human-associated habitat stool human-gut missing: not collected 19.91989319 mL/kg/day Yes No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 63.55140187 mL/kg/day 1 days neonate Homo sapiens 11712-54 9606 5 hours No No 4 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 34 years 0 doses 0 doses 0 doses 0 doses No 1 doses High School 0 doses 0 doses Hispanic 6.782376502 mL/kg/day 1063 mL 373 mL 127 mL 11712.SUBJECT54.STOOL.1266.mzXML 11712.SUBJECT54.STOOL.1266 not applicable 16 14267 fecal Singleton 2425 grams missing: not collected Yes Donor human milk No missing: not collected 9.345794393 -8.037383178 23.8643634 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes 0 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT55.STOOL.1269 2 Yes days 1 days SUBJECT55.STOOL.1269 Yes Yes Yes 7 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 45 cm 2275 grams 11.23 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2605 grams vaginal SUBJECT55.STOOL.1269 53.06122449 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 10 days 4 days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 95.94976452 mL/kg/day 1 days neonate Homo sapiens 11712-55 9606 8 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 42.88854003 mL/kg/day 845 mL 0 mL 683 mL 11712.SUBJECT55.STOOL.1269.mzXML 11712.SUBJECT55.STOOL.1269 not applicable 16 14279 fecal Twin 2100 grams missing: not collected Yes Donor human milk Yes missing: not collected 7.692307692 14.50549451 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 6 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 6 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT56.STOOL.1272 0 No days 1 days SUBJECT56.STOOL.1272 Yes Yes Yes 9 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 44 cm 2290 grams 11.83 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2580 grams vaginal SUBJECT56.STOOL.1272 62.75733001 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 13 days 4 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 103.7429819 mL/kg/day 1 days neonate Homo sapiens 11712-56 9606 3 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 40.9856519 mL/kg/day 1006 mL 0 mL 657 mL 11712.SUBJECT56.STOOL.1272.mzXML 11712.SUBJECT56.STOOL.1272 not applicable 16 14260 fecal Twin 2090 grams missing: not collected Yes Donor human milk Yes missing: not collected 8.733624454 12.66375546 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 1 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 15 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT6.ORAL.1087 0 No days 1 days SUBJECT6.ORAL.1087 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.ORAL.1087 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 1 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.ORAL.1087.mzXML 11712.SUBJECT6.ORAL.1087 not applicable 1 13392 oral Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.SKIN.1092 0 No days 1 days SUBJECT6.SKIN.1092 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.SKIN.1092 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 1 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.SKIN.1092.mzXML 11712.SUBJECT6.SKIN.1092 not applicable 15 17054 skin Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.STOOL.1097 0 No days 1 days SUBJECT6.STOOL.1097 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.STOOL.1097 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 1 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.STOOL.1097.mzXML 11712.SUBJECT6.STOOL.1097 not applicable 5 13772 fecal Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.ORAL.1102 0 No days 1 days SUBJECT7.ORAL.1102 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.ORAL.1102 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat oral human-oral No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 1 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.ORAL.1102.mzXML 11712.SUBJECT7.ORAL.1102 not applicable 1 13455 oral Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.SKIN.1107 0 No days 1 days SUBJECT7.SKIN.1107 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.SKIN.1107 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat skin human-skin No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 1 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.SKIN.1107.mzXML 11712.SUBJECT7.SKIN.1107 not applicable 12 17003 skin Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.STOOL.1111 0 No days 1 days SUBJECT7.STOOL.1111 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.STOOL.1111 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat stool human-gut No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 1 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.STOOL.1111.mzXML 11712.SUBJECT7.STOOL.1111 not applicable 4 13637 fecal Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1126 2 Yes days 1 days SUBJECT8.ORAL.1126 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1126 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 1 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1126.mzXML 11712.SUBJECT8.ORAL.1126 not applicable 1 13364 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1143 2 Yes days 1 days SUBJECT8.SKIN.1143 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1143 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 1 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1143.mzXML 11712.SUBJECT8.SKIN.1143 not applicable 12 16951 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1166 2 Yes days 1 days SUBJECT9.ORAL.1166 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1166 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 1 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1166.mzXML 11712.SUBJECT9.ORAL.1166 not applicable 14 14384 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1185 2 Yes days 1 days SUBJECT9.SKIN.1185 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1185 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 1 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1185.mzXML 11712.SUBJECT9.SKIN.1185 not applicable 15 17111 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1205 2 Yes days 1 days SUBJECT9.STOOL.1205 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1205 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 1 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1205.mzXML 11712.SUBJECT9.STOOL.1205 not applicable 4 13589 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.1 0 No days 2 days SUBJECT1.ORAL.1 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:11:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.1 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 2 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.1.mzXML 11712.SUBJECT1.ORAL.1 not applicable 14 14350 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.11 0 No days 2 days SUBJECT1.SKIN.11 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:11:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.11 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 2 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.11.mzXML 11712.SUBJECT1.SKIN.11 not applicable 11 16844 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.31 0 No days 2 days SUBJECT10.ORAL.31 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.31 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 2 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.31.mzXML 11712.SUBJECT10.ORAL.31 not applicable 14 14409 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.39 0 No days 2 days SUBJECT10.SKIN.39 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.39 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 2 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.39.mzXML 11712.SUBJECT10.SKIN.39 not applicable 11 16849 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.46 0 No days 2 days SUBJECT10.STOOL.46 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.46 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 2 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.46.mzXML 11712.SUBJECT10.STOOL.46 not applicable 6 14169 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.ORAL.54 0 No days 2 days SUBJECT11.ORAL.54 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:41:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.ORAL.54 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 2 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.ORAL.54.mzXML 11712.SUBJECT11.ORAL.54 not applicable 14 14364 oral Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.SKIN.58 0 No days 2 days SUBJECT11.SKIN.58 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:41:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.SKIN.58 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 2 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.SKIN.58.mzXML 11712.SUBJECT11.SKIN.58 not applicable 11 16897 skin Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.STOOL.61 0 No days 2 days SUBJECT11.STOOL.61 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.STOOL.61 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 2 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.STOOL.61.mzXML 11712.SUBJECT11.STOOL.61 not applicable 7 14133 fecal Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.94 0 No days 2 days SUBJECT12.STOOL.94 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.94 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 2 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.94.mzXML 11712.SUBJECT12.STOOL.94 not applicable 5 13708 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.ORAL.109 0 No days 2 days SUBJECT13.ORAL.109 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.ORAL.109 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 2 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.ORAL.109.mzXML 11712.SUBJECT13.ORAL.109 not applicable 14 14407 oral Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.SKIN.112 0 No days 2 days SUBJECT13.SKIN.112 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.SKIN.112 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 2 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.SKIN.112.mzXML 11712.SUBJECT13.SKIN.112 not applicable 11 16895 skin Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.STOOL.115 0 No days 2 days SUBJECT13.STOOL.115 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.STOOL.115 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 2 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.STOOL.115.mzXML 11712.SUBJECT13.STOOL.115 not applicable 7 14122 fecal Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.118 0 No days 2 days SUBJECT14.ORAL.118 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.118 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 2 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.118.mzXML 11712.SUBJECT14.ORAL.118 not applicable 14 14341 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.127 0 No days 2 days SUBJECT14.SKIN.127 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:41:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.127 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 2 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.127.mzXML 11712.SUBJECT14.SKIN.127 not applicable 11 16870 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.137 0 No days 2 days SUBJECT14.STOOL.137 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.137 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 2 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL not_used 11712.SUBJECT14.STOOL.137 didn't inject 7 14110 not_used Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.ORAL.146 0 No days 2 days SUBJECT15.ORAL.146 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.ORAL.146 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 2 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.ORAL.146.mzXML 11712.SUBJECT15.ORAL.146 not applicable 1 13461 oral Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.SKIN.149 0 No days 2 days SUBJECT15.SKIN.149 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.SKIN.149 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 2 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.SKIN.149.mzXML 11712.SUBJECT15.SKIN.149 not applicable 10 16772 skin Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.STOOL.151 0 No days 2 days SUBJECT15.STOOL.151 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.STOOL.151 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut No 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 2 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.STOOL.151.mzXML 11712.SUBJECT15.STOOL.151 not applicable 6 14209 fecal Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.154 0 No days 2 days SUBJECT16.ORAL.154 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.154 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 2 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.154.mzXML 11712.SUBJECT16.ORAL.154 not applicable 2 13519 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.171 0 No days 2 days SUBJECT16.SKIN.171 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.171 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 2 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.171.mzXML 11712.SUBJECT16.SKIN.171 not applicable 15 17127 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.188 0 No days 2 days SUBJECT16.STOOL.188 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.188 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 2 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.188.mzXML 11712.SUBJECT16.STOOL.188 not applicable 6 14234 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.203 7 Yes days 2 days SUBJECT17.ORAL.203 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.203 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 2 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.203.mzXML 11712.SUBJECT17.ORAL.203 not applicable 2 13531 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.225 7 Yes days 2 days SUBJECT17.SKIN.225 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.225 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 2 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.225.mzXML 11712.SUBJECT17.SKIN.225 not applicable 10 16812 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.247 7 Yes days 2 days SUBJECT17.STOOL.247 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.247 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 2 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.247.mzXML 11712.SUBJECT17.STOOL.247 not applicable 6 14178 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.270 2 Yes days 2 days SUBJECT18.ORAL.270 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.270 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 2 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.270.mzXML 11712.SUBJECT18.ORAL.270 not applicable 1 13445 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.292 2 Yes days 2 days SUBJECT18.SKIN.292 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.292 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 2 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.292.mzXML 11712.SUBJECT18.SKIN.292 not applicable 10 16727 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.314 2 Yes days 2 days SUBJECT18.STOOL.314 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.314 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 2 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.314.mzXML 11712.SUBJECT18.STOOL.314 not applicable 5 13727 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.335 0 No days 2 days SUBJECT19.ORAL.335 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.335 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.335.mzXML 11712.SUBJECT19.ORAL.335 not applicable 8 13801 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.350 0 No days 2 days SUBJECT19.SKIN.350 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.350 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.350.mzXML 11712.SUBJECT19.SKIN.350 not applicable 15 17128 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.365 0 No days 2 days SUBJECT19.STOOL.365 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.365 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.365.mzXML 11712.SUBJECT19.STOOL.365 not applicable 3 13999 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT2.ORAL.380 0 No days 2 days SUBJECT2.ORAL.380 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.ORAL.380 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 2 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.ORAL.380.mzXML 11712.SUBJECT2.ORAL.380 not applicable 14 14370 oral Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.SKIN.384 0 No days 2 days SUBJECT2.SKIN.384 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.SKIN.384 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 2 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.SKIN.384.mzXML 11712.SUBJECT2.SKIN.384 not applicable 11 16902 skin Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.STOOL.388 0 No days 2 days SUBJECT2.STOOL.388 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.STOOL.388 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 2 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.STOOL.388.mzXML 11712.SUBJECT2.STOOL.388 not applicable 6 14240 fecal Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.392 0 No days 2 days SUBJECT20.ORAL.392 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.392 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.392.mzXML 11712.SUBJECT20.ORAL.392 not applicable 8 13793 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.407 0 No days 2 days SUBJECT20.SKIN.407 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.407 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.407.mzXML 11712.SUBJECT20.SKIN.407 not applicable 13 17169 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.421 0 No days 2 days SUBJECT20.STOOL.421 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.421 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.421.mzXML 11712.SUBJECT20.STOOL.421 not applicable 4 13671 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.437 7 Yes days 2 days SUBJECT21.ORAL.437 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.437 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 2 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.437.mzXML 11712.SUBJECT21.ORAL.437 not applicable 8 13877 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.447 7 Yes days 2 days SUBJECT21.SKIN.447 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.447 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 2 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.447.mzXML 11712.SUBJECT21.SKIN.447 not applicable 15 17050 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.457 7 Yes days 2 days SUBJECT21.STOOL.457 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.457 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 2 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.457.mzXML 11712.SUBJECT21.STOOL.457 not applicable 6 14154 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.ORAL.467 0 No days 2 days SUBJECT22.ORAL.467 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.ORAL.467 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 2 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.ORAL.467.mzXML 11712.SUBJECT22.ORAL.467 not applicable 8 13825 oral Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.SKIN.472 0 No days 2 days SUBJECT22.SKIN.472 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.SKIN.472 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 2 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.SKIN.472.mzXML 11712.SUBJECT22.SKIN.472 not applicable 15 17089 skin Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.STOOL.476 0 No days 2 days SUBJECT22.STOOL.476 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.STOOL.476 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 2 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.STOOL.476.mzXML 11712.SUBJECT22.STOOL.476 not applicable 3 14048 fecal Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.481 0 No days 2 days SUBJECT23.ORAL.481 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.481 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 2 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.481.mzXML 11712.SUBJECT23.ORAL.481 not applicable 8 13838 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.490 0 No days 2 days SUBJECT23.SKIN.490 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.490 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 2 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.499 0 No days 2 days SUBJECT23.STOOL.499 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.499 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 2 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not_used 11712.SUBJECT23.STOOL.499 didn't inject 3 13993 not_used Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.508 0 No days 2 days SUBJECT24.ORAL.508 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.508 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 2 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.ORAL.508.mzXML 11712.SUBJECT24.ORAL.508 not applicable 8 13815 oral Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.515 0 No days 2 days SUBJECT24.SKIN.515 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.515 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 2 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.522 0 No days 2 days SUBJECT24.STOOL.522 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.522 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 2 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.522.mzXML 11712.SUBJECT24.STOOL.522 not applicable 3 13984 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.529 0 No days 2 days SUBJECT25.ORAL.529 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.529 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 2 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.529.mzXML 11712.SUBJECT25.ORAL.529 not applicable 8 13830 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.538 0 No days 2 days SUBJECT25.SKIN.538 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.538 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 2 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.547 0 No days 2 days SUBJECT25.STOOL.547 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.547 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 2 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.547.mzXML 11712.SUBJECT25.STOOL.547 not applicable 3 14017 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.556 3 Yes days 2 days SUBJECT26.ORAL.556 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 0:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.556 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 2 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.556.mzXML 11712.SUBJECT26.ORAL.556 not applicable 9 13972 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.562 3 Yes days 2 days SUBJECT26.SKIN.562 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 0:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.562 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 2 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.562.mzXML 11712.SUBJECT26.SKIN.562 not applicable 13 17165 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.568 3 Yes days 2 days SUBJECT26.STOOL.568 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 0:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.568 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 2 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.568.mzXML 11712.SUBJECT26.STOOL.568 not applicable 4 13592 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.ORAL.574 0 No days 2 days SUBJECT27.ORAL.574 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.ORAL.574 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 2 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.ORAL.574.mzXML 11712.SUBJECT27.ORAL.574 not applicable 8 13874 oral Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.SKIN.578 0 No days 2 days SUBJECT27.SKIN.578 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.SKIN.578 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 2 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.STOOL.581 0 No days 2 days SUBJECT27.STOOL.581 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.STOOL.581 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 2 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.STOOL.581.mzXML 11712.SUBJECT27.STOOL.581 not applicable 3 14035 fecal Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.585 0 No days 2 days SUBJECT28.ORAL.585 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 1:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.585 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 2 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.ORAL.585.mzXML 11712.SUBJECT28.ORAL.585 not applicable 2 13468 oral Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.593 0 No days 2 days SUBJECT28.SKIN.593 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 1:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.593 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 2 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.593.mzXML 11712.SUBJECT28.SKIN.593 not applicable 10 16811 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.600 0 No days 2 days SUBJECT28.STOOL.600 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.600 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 2 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.600.mzXML 11712.SUBJECT28.STOOL.600 not applicable 5 13763 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.ORAL.608 2 Yes days 2 days SUBJECT29.ORAL.608 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 1:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.ORAL.608 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 2 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.ORAL.608.mzXML 11712.SUBJECT29.ORAL.608 not applicable 9 13888 oral Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.SKIN.613 2 Yes days 2 days SUBJECT29.SKIN.613 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 1:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.SKIN.613 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 2 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.STOOL.617 2 Yes days 2 days SUBJECT29.STOOL.617 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.STOOL.617 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 2 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.STOOL.617.mzXML 11712.SUBJECT29.STOOL.617 not applicable 3 14059 fecal Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.621 0 No days 2 days SUBJECT3.ORAL.621 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.621 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 2 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.621.mzXML 11712.SUBJECT3.ORAL.621 not applicable 14 14340 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.629 0 No days 2 days SUBJECT3.SKIN.629 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.629 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 2 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.629.mzXML 11712.SUBJECT3.SKIN.629 not applicable 11 16909 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.655 2 Yes days 2 days SUBJECT30.ORAL.655 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.655 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 2 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.655.mzXML 11712.SUBJECT30.ORAL.655 not applicable 9 13926 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.672 2 Yes days 2 days SUBJECT30.SKIN.672 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.672 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 2 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.673.B.mzXML 11712.SUBJECT30.SKIN.673.B "Was a duplicate, verified which sample is which" 13 17159 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.699 2 Yes days 2 days SUBJECT31.ORAL.699 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.699 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 2 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.699.mzXML 11712.SUBJECT31.ORAL.699 not applicable 14 14401 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2132 2 Yes days 2 days SUBJECT31.SKIN.2132 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2132 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 2 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2132.mzXML 11712.SUBJECT31.SKIN.2132 not applicable 11 16845 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.1230 2 Yes days 2 days SUBJECT31.STOOL.1230 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.1230 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 2 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.1230.mzXML 11712.SUBJECT31.STOOL.1230 not applicable 7 14108 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.ORAL.712 0 No days 2 days SUBJECT32.ORAL.712 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.ORAL.712 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 2 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.ORAL.712.mzXML 11712.SUBJECT32.ORAL.712 not applicable 2 13526 oral Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.SKIN.716 0 No days 2 days SUBJECT32.SKIN.716 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.SKIN.716 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 2 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.SKIN.716.mzXML 11712.SUBJECT32.SKIN.716 not applicable 12 16944 skin Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.STOOL.720 0 No days 2 days SUBJECT32.STOOL.720 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.STOOL.720 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 2 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.STOOL.720.mzXML 11712.SUBJECT32.STOOL.720 not applicable 4 13647 fecal Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.ORAL.724 2 Yes days 2 days SUBJECT33.ORAL.724 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.ORAL.724 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral Yes 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 2 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT33.ORAL.724.mzXML 11712.SUBJECT33.ORAL.724 not applicable 1 13443 oral Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.SKIN.726 2 Yes days 2 days SUBJECT33.SKIN.726 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.SKIN.726 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin Yes 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 2 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT33.SKIN.726.mzXML 11712.SUBJECT33.SKIN.726 not applicable 12 17012 skin Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT33.STOOL.728 2 Yes days 2 days SUBJECT33.STOOL.728 Yes Yes Yes 9 0.18 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 47 cm 3645 g 16.5 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3670 grams c-section SUBJECT33.STOOL.728 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected not applicable days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut Yes 34.43072702 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 3.29218107 mL/kg/day 2 days neonate Homo sapiens 11712-33 9606 1 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 19 years 0 doses 0 doses 2 doses 0 doses No 0 doses High School 0 doses 1 doses white 3.29218107 mL/kg/day 0 mL 251 mL 24 mL 11712.SUBJECT33.STOOL.728.mzXML 11712.SUBJECT33.STOOL.728 not applicable 5 13720 fecal Singleton 3645 grams missing: not collected No Formula Yes missing: not collected 0 0.685871056 91.27272727 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.1257.B 0 No days 2 days SUBJECT34.ORAL.1257.B Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.1257.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 2 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.1257.B.mzXML 11712.SUBJECT34.ORAL.1257.B true duplicate 2 13563 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.1258.A 0 No days 2 days SUBJECT34.SKIN.1258.A Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.1258.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 2 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.1258.A.mzXML 11712.SUBJECT34.SKIN.1258.A true duplicate 12 16996 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.1258.B 0 No days 2 days SUBJECT34.SKIN.1258.B Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.1258.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 2 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.1258.B.mzXML 11712.SUBJECT34.SKIN.1258.B true duplicate 12 16991 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.745 0 No days 2 days SUBJECT34.STOOL.745 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.745 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 2 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.745.mzXML 11712.SUBJECT34.STOOL.745 not applicable 7 14103 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.1259.A 0 No days 2 days SUBJECT35.ORAL.1259.A Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.1259.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 2 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.1259.A.mzXML 11712.SUBJECT35.ORAL.1259.A extra_time_info 2 13514 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.1259.B 0 No days 2 days SUBJECT35.ORAL.1259.B Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.1259.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 2 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.1259.B.mzXML 11712.SUBJECT35.ORAL.1259.B extra_time_info 2 13515 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.1260.A 0 No days 2 days SUBJECT35.SKIN.1260.A Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.1260.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 2 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.1260.A.mzXML 11712.SUBJECT35.SKIN.1260.A true duplicate 12 17008 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.1260.B 0 No days 2 days SUBJECT35.SKIN.1260.B Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.1260.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 2 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.1260.B.mzXML 11712.SUBJECT35.SKIN.1260.B true duplicate 12 16957 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.764 0 No days 2 days SUBJECT35.STOOL.764 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.764 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 2 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL not applicable not applicable not applicable not applicable not applicable not applicable Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.771 2 Yes days 2 days SUBJECT36.ORAL.771 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.771 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 2 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.771.mzXML 11712.SUBJECT36.ORAL.771 not applicable 2 13484 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.777 2 Yes days 2 days SUBJECT36.SKIN.777 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.777 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 2 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.777.mzXML 11712.SUBJECT36.SKIN.777 not applicable 12 16980 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.783 2 Yes days 2 days SUBJECT36.STOOL.783 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.783 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 2 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL not_used 11712.SUBJECT36.STOOL.783 didn't inject 7 14104 not_used Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.789 2 Yes days 2 days SUBJECT37.ORAL.789 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.789 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 2 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.789.A.mzXML 11712.SUBJECT37.ORAL.789.A not applicable 1 13419 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.795 2 Yes days 2 days SUBJECT37.SKIN.795 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.795 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 2 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.795.mzXML 11712.SUBJECT37.SKIN.795 not applicable 12 16954 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.800 2 Yes days 2 days SUBJECT37.STOOL.800 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:58:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.800 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 2 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.800.mzXML 11712.SUBJECT37.STOOL.800 not applicable 4 13610 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.811 0 No days 2 days SUBJECT38.ORAL.811 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.811 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 2 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.811.mzXML 11712.SUBJECT38.ORAL.811 not applicable 2 13502 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.819 0 No days 2 days SUBJECT38.SKIN.819 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.819 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 2 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.819.mzXML 11712.SUBJECT38.SKIN.819 not applicable 12 16970 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.826 0 No days 2 days SUBJECT38.STOOL.826 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.826 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 2 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.826.mzXML 11712.SUBJECT38.STOOL.826 not applicable 4 13661 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.ORAL.828 0 No days 2 days SUBJECT39.ORAL.828 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:24:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.ORAL.828 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat oral human-oral No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 2 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.ORAL.828.mzXML 11712.SUBJECT39.ORAL.828 not applicable 1 13442 oral Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 447426 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.SKIN.832 0 No days 2 days SUBJECT39.SKIN.832 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.SKIN.832 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat skin human-skin No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 2 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.SKIN.832.mzXML 11712.SUBJECT39.SKIN.832 not applicable 12 17010 skin Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 539655 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.841 0 No days 2 days SUBJECT4.ORAL.841 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.841 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 2 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.841.mzXML 11712.SUBJECT4.ORAL.841 not applicable 14 14345 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.851 0 No days 2 days SUBJECT4.SKIN.851 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.851 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 2 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.851.mzXML 11712.SUBJECT4.SKIN.851 not applicable 11 16890 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.862 0 No days 2 days SUBJECT4.STOOL.862 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.862 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 2 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.862.mzXML 11712.SUBJECT4.STOOL.862 not applicable 7 14139 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.882 5 Yes days 2 days SUBJECT40.ORAL.882 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.882 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.882.mzXML 11712.SUBJECT40.ORAL.882 not applicable 1 13402 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.902 5 Yes days 2 days SUBJECT40.SKIN.902 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.902 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.902.mzXML 11712.SUBJECT40.SKIN.902 not applicable 12 17026 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.921 5 Yes days 2 days SUBJECT40.STOOL.921 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.921 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 2 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.921.mzXML 11712.SUBJECT40.STOOL.921 not applicable 5 13721 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.945 0 No days 2 days SUBJECT41.ORAL.945 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.945 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 2 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.945.mzXML 11712.SUBJECT41.ORAL.945 not applicable 2 13483 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.961 0 No days 2 days SUBJECT41.SKIN.961 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.961 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 2 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.961.mzXML 11712.SUBJECT41.SKIN.961 not applicable 12 16989 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.977 0 No days 2 days SUBJECT41.STOOL.977 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.977 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 2 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.977.mzXML 11712.SUBJECT41.STOOL.977 not applicable 5 13709 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.979 0 No days 2 days SUBJECT42.ORAL.979 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.979 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 2 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.979.mzXML 11712.SUBJECT42.ORAL.979 not applicable 2 13470 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.994 0 No days 2 days SUBJECT42.SKIN.994 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.994 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 2 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.994.mzXML 11712.SUBJECT42.SKIN.994 not applicable 10 16769 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1010 0 No days 2 days SUBJECT42.STOOL.1010 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1010 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 2 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1010.mzXML 11712.SUBJECT42.STOOL.1010 not applicable 6 14200 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1040 5 Yes days 2 days SUBJECT43.ORAL.1040 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1040 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 2 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1040.mzXML 11712.SUBJECT43.ORAL.1040 not applicable 2 13495 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1060 5 Yes days 2 days SUBJECT43.SKIN.1060 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1060 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 2 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1060.mzXML 11712.SUBJECT43.SKIN.1060 not applicable 10 16733 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1080 5 Yes days 2 days SUBJECT43.STOOL.1080 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1080 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 2 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1080.mzXML 11712.SUBJECT43.STOOL.1080 not applicable 6 14224 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT47.STOOL.1246 0 No days 2 days SUBJECT47.STOOL.1246 No Yes Yes 8 0.34 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 51 cm 2735 grams 10.51 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2640 grams vaginal SUBJECT47.STOOL.1246 36.5630713 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 3 days not applicable days 3 days 5 days 105 2 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.36 20 Calories per ounce 72.34264821 mL/kg/day 2 days neonate Homo sapiens 11712-47 9606 2 hours No No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 31 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses Graduate school 1 doses 0 doses "White, non-hispanic" 35.77957691 mL/kg/day 700 mL 0 mL 685 mL 11712.SUBJECT47.STOOL.1246.mzXML 11712.SUBJECT47.STOOL.1246 not applicable 16 14274 fecal Singleton 2580 grams missing: not collected No Donor human milk No missing: not collected 5.667276051 -3.473491773 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT49.STOOL.1253 0 No days 2 days SUBJECT49.STOOL.1253 No Yes Yes 8 0.25 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2405 grams 10.22 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 0:25:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2320 grams c-section SUBJECT49.STOOL.1253 32.84823285 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.28 20 Calories per ounce 52.05821206 mL/kg/day 2 days neonate Homo sapiens 11712-49 9606 9 hours No No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 3 doses Black 19.20997921 mL/kg/day 395 mL 0 mL 231 mL 11712.SUBJECT49.STOOL.1253.mzXML 11712.SUBJECT49.STOOL.1253 not applicable 16 14286 fecal Singleton 2280 grams missing: not collected No Donor human milk No missing: not collected 5.197505198 -3.534303534 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT57.STOOL.1275 0 No days 2 days SUBJECT57.STOOL.1275 Yes Yes Yes 9 0.29 2 missing: not collected 0 days 34 weeks missing: not collected not applicable 44 cm 1930 grams 9.97 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 1995 grams vaginal SUBJECT57.STOOL.1275 6.36565507 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 3 days missing: not collected 6 days 9 days 6 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 21.65062916 mL/kg/day Yes Yes USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.72 22 Calories per ounce 50.88823094 mL/kg/day 2 days neonate Homo sapiens 11712-57 9606 1 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 11 days 35 years 0 doses 10 doses 0 doses 2 doses No 0 doses High School 0 doses 0 doses Hispanic 44.52257587 mL/kg/day 86 mL 292.5 mL 601.5 mL 11712.SUBJECT57.STOOL.1275.mzXML 11712.SUBJECT57.STOOL.1275 not applicable 16 14262 fecal Singleton 1850 grams missing: not collected No Formula No missing: not collected 4.14507772 3.367875648 29.84693878 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 2 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT6.ORAL.1088 0 No days 2 days SUBJECT6.ORAL.1088 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.ORAL.1088 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 2 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.ORAL.1088.mzXML 11712.SUBJECT6.ORAL.1088 not applicable 8 13798 oral Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.SKIN.1093 0 No days 2 days SUBJECT6.SKIN.1093 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.SKIN.1093 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 2 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.SKIN.1093.mzXML 11712.SUBJECT6.SKIN.1093 not applicable 12 16988 skin Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.STOOL.1098 0 No days 2 days SUBJECT6.STOOL.1098 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.STOOL.1098 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 2 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.STOOL.1098.B.mzXML 11712.SUBJECT6.STOOL.1098.B "Was a duplicate, verified which sample is which" 5 13744 fecal Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.ORAL.1103 0 No days 2 days SUBJECT7.ORAL.1103 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.ORAL.1103 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat oral human-oral No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 2 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.ORAL.1103.mzXML 11712.SUBJECT7.ORAL.1103 not applicable 2 13562 oral Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.SKIN.1108 0 No days 2 days SUBJECT7.SKIN.1108 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.SKIN.1108 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat skin human-skin No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 2 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.SKIN.1108.mzXML 11712.SUBJECT7.SKIN.1108 not applicable 12 16973 skin Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.STOOL.1112 0 No days 2 days SUBJECT7.STOOL.1112 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.STOOL.1112 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat stool human-gut No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 2 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.STOOL.1112.mzXML 11712.SUBJECT7.STOOL.1112 not applicable 5 13769 fecal Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1127 2 Yes days 2 days SUBJECT8.ORAL.1127 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1127 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 2 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1127.mzXML 11712.SUBJECT8.ORAL.1127 not applicable 1 13376 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1144 2 Yes days 2 days SUBJECT8.SKIN.1144 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1144 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 2 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1144.mzXML 11712.SUBJECT8.SKIN.1144 not applicable 15 17062 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1160 2 Yes days 2 days SUBJECT8.STOOL.1160 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1160 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 2 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1160.mzXML 11712.SUBJECT8.STOOL.1160 not applicable 5 13714 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1167 2 Yes days 2 days SUBJECT9.ORAL.1167 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1167 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 2 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1167.mzXML 11712.SUBJECT9.ORAL.1167 not applicable 8 13880 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1186 2 Yes days 2 days SUBJECT9.SKIN.1186 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1186 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 2 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1186.mzXML 11712.SUBJECT9.SKIN.1186 not applicable 15 17093 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1206 2 Yes days 2 days SUBJECT9.STOOL.1206 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1206 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 2 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1206.mzXML 11712.SUBJECT9.STOOL.1206 not applicable 5 13737 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.2 0 No days 3 days SUBJECT1.ORAL.2 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.2 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 3 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.2.mzXML 11712.SUBJECT1.ORAL.2 not applicable 14 14362 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.12 0 No days 3 days SUBJECT1.SKIN.12 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.12 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 3 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.12.mzXML 11712.SUBJECT1.SKIN.12 not applicable 11 16858 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.21 0 No days 3 days SUBJECT1.STOOL.21 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.21 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 3 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.21.mzXML 11712.SUBJECT1.STOOL.21 not applicable 7 14138 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.32 0 No days 3 days SUBJECT10.ORAL.32 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.32 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 3 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.32.mzXML 11712.SUBJECT10.ORAL.32 not applicable 14 14332 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.40 0 No days 3 days SUBJECT10.SKIN.40 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.40 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 3 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.40.mzXML 11712.SUBJECT10.SKIN.40 not applicable 11 16830 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.47 0 No days 3 days SUBJECT10.STOOL.47 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.47 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 3 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.47.mzXML 11712.SUBJECT10.STOOL.47 not applicable 6 14231 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.ORAL.55 0 No days 3 days SUBJECT11.ORAL.55 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.ORAL.55 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 3 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL not_used 11712.SUBJECT11.ORAL.55 no TIC 14 14358 not_used Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.SKIN.59 0 No days 3 days SUBJECT11.SKIN.59 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.SKIN.59 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 3 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.SKIN.59.mzXML 11712.SUBJECT11.SKIN.59 not applicable 11 16891 skin Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.STOOL.62 0 No days 3 days SUBJECT11.STOOL.62 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.STOOL.62 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 3 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.STOOL.62.mzXML 11712.SUBJECT11.STOOL.62 not applicable 7 14125 fecal Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.65 0 No days 3 days SUBJECT12.ORAL.65 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.65 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 3 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.65.mzXML 11712.SUBJECT12.ORAL.65 not applicable 1 13451 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.80 0 No days 3 days SUBJECT12.SKIN.80 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.80 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 3 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.80.mzXML 11712.SUBJECT12.SKIN.80 not applicable 12 16992 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.95 0 No days 3 days SUBJECT12.STOOL.95 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.95 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 3 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.95.mzXML 11712.SUBJECT12.STOOL.95 not applicable 5 13722 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.ORAL.110 0 No days 3 days SUBJECT13.ORAL.110 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:27:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.ORAL.110 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 3 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.ORAL.110.mzXML 11712.SUBJECT13.ORAL.110 not applicable 14 14397 oral Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.SKIN.113 0 No days 3 days SUBJECT13.SKIN.113 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:27:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.SKIN.113 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 3 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.SKIN.113.mzXML 11712.SUBJECT13.SKIN.113 not applicable 11 16834 skin Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT13.STOOL.116 0 No days 3 days SUBJECT13.STOOL.116 No Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 50.5 cm 3545 g 13.9 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 3250 grams vaginal SUBJECT13.STOOL.116 9.752166029 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.42 20 Calories per ounce 9.792464235 mL/kg/day 3 days neonate Homo sapiens 11712-13 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 0.040298207 mL/kg/day 242 mL 0 mL 1 mL 11712.SUBJECT13.STOOL.116.mzXML 11712.SUBJECT13.STOOL.116 not applicable 7 14081 fecal Singleton 3250 grams missing: not collected No Donor human milk No missing: not collected 8.32157969 -8.32157969 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.119 0 No days 3 days SUBJECT14.ORAL.119 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.119 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 3 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.119.B.mzXML 11712.SUBJECT14.ORAL.119.B "Was a duplicate, verified which sample is which" 1 13373 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.128 0 No days 3 days SUBJECT14.SKIN.128 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.128 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 3 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.128.mzXML 11712.SUBJECT14.SKIN.128 not applicable 10 16784 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.138 0 No days 3 days SUBJECT14.STOOL.138 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.138 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 3 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.138.mzXML 11712.SUBJECT14.STOOL.138 not applicable 5 13694 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.ORAL.147 0 No days 3 days SUBJECT15.ORAL.147 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.ORAL.147 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral Yes 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 3 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.ORAL.147.mzXML 11712.SUBJECT15.ORAL.147 not applicable 8 13799 oral Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.SKIN.150 0 No days 3 days SUBJECT15.SKIN.150 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.SKIN.150 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin Yes 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 3 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.SKIN.150.mzXML 11712.SUBJECT15.SKIN.150 not applicable 10 16820 skin Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT15.STOOL.152 0 No days 3 days SUBJECT15.STOOL.152 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 46.5 cm 2902 g 13.42 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2805 grams vaginal SUBJECT15.STOOL.152 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 3 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut Yes 2.297266253 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.25 20 Calories per ounce not applicable mL/kg/day 3 days neonate Homo sapiens 11712-15 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 3 days 28 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 2 doses black not recorded mL/kg/day 0 mL 20 mL not recorded mL 11712.SUBJECT15.STOOL.152.mzXML 11712.SUBJECT15.STOOL.152 not applicable 6 14214 fecal Singleton 2805 grams missing: not collected No Formula No missing: not collected 3.342522398 -3.342522398 not applicable missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.155 0 No days 3 days SUBJECT16.ORAL.155 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.155 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 3 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not_used 11712.SUBJECT16.ORAL.155 didn't inject 1 13409 not_used Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.172 0 No days 3 days SUBJECT16.SKIN.172 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.172 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 3 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.172.mzXML 11712.SUBJECT16.SKIN.172 not applicable 10 16809 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.189 0 No days 3 days SUBJECT16.STOOL.189 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.189 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 3 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not_used 11712.SUBJECT16.STOOL.189 didn't inject 6 14174 not_used Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.204 7 Yes days 3 days SUBJECT17.ORAL.204 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.204 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 3 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.204.A.mzXML 11712.SUBJECT17.ORAL.204.A "Was a duplicate, verified which sample is which" 1 13449 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.226 7 Yes days 3 days SUBJECT17.SKIN.226 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.226 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 3 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.226.mzXML 11712.SUBJECT17.SKIN.226 not applicable 10 16734 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.248 7 Yes days 3 days SUBJECT17.STOOL.248 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.248 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 3 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL not_used 11712.SUBJECT17.STOOL.248 didn't inject 6 14166 not_used Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.271 2 Yes days 3 days SUBJECT18.ORAL.271 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.271 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 3 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL not_used 11712.SUBJECT18.ORAL.271 didn't inject 1 13372 not_used Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.293 2 Yes days 3 days SUBJECT18.SKIN.293 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.293 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 3 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.293.mzXML 11712.SUBJECT18.SKIN.293 not applicable 10 16751 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.315 2 Yes days 3 days SUBJECT18.STOOL.315 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.315 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 3 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.315.mzXML 11712.SUBJECT18.STOOL.315 not applicable 5 13764 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.336 0 No days 3 days SUBJECT19.ORAL.336 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.336 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.336.mzXML 11712.SUBJECT19.ORAL.336 not applicable 8 13869 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.351 0 No days 3 days SUBJECT19.SKIN.351 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.351 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.351.mzXML 11712.SUBJECT19.SKIN.351 not applicable 15 17048 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.366 0 No days 3 days SUBJECT19.STOOL.366 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.366 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.366.mzXML 11712.SUBJECT19.STOOL.366 not applicable 4 13609 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT2.ORAL.381 0 No days 3 days SUBJECT2.ORAL.381 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.ORAL.381 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 3 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.ORAL.381.mzXML 11712.SUBJECT2.ORAL.381 not applicable 14 14339 oral Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.SKIN.385 0 No days 3 days SUBJECT2.SKIN.385 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.SKIN.385 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 3 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.SKIN.385.mzXML 11712.SUBJECT2.SKIN.385 not applicable 11 16866 skin Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.STOOL.389 0 No days 3 days SUBJECT2.STOOL.389 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.STOOL.389 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 3 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.STOOL.389.mzXML 11712.SUBJECT2.STOOL.389 not applicable 6 14219 fecal Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.393 0 No days 3 days SUBJECT20.ORAL.393 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.393 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.393.mzXML 11712.SUBJECT20.ORAL.393 not applicable 8 13808 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.408 0 No days 3 days SUBJECT20.SKIN.408 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.408 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.408.mzXML 11712.SUBJECT20.SKIN.408 not applicable 13 17205 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.422 0 No days 3 days SUBJECT20.STOOL.422 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.422 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.422.mzXML 11712.SUBJECT20.STOOL.422 not applicable 3 14036 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.438 7 Yes days 3 days SUBJECT21.ORAL.438 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.438 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 3 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.438.mzXML 11712.SUBJECT21.ORAL.438 not applicable 2 13489 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.448 7 Yes days 3 days SUBJECT21.SKIN.448 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.448 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 3 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.448.mzXML 11712.SUBJECT21.SKIN.448 not applicable 10 16748 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.458 7 Yes days 3 days SUBJECT21.STOOL.458 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.458 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 3 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL not_used 11712.SUBJECT21.STOOL.458 didn't inject 6 14162 not_used Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.ORAL.468 0 No days 3 days SUBJECT22.ORAL.468 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.ORAL.468 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 3 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.ORAL.468.mzXML 11712.SUBJECT22.ORAL.468 not applicable 8 13833 oral Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.SKIN.473 0 No days 3 days SUBJECT22.SKIN.473 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.SKIN.473 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 3 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.SKIN.473.mzXML 11712.SUBJECT22.SKIN.473 not applicable 15 17059 skin Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.STOOL.477 0 No days 3 days SUBJECT22.STOOL.477 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.STOOL.477 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 3 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.STOOL.477.mzXML 11712.SUBJECT22.STOOL.477 not applicable 3 14066 fecal Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.482 0 No days 3 days SUBJECT23.ORAL.482 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.482 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 3 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.482.mzXML 11712.SUBJECT23.ORAL.482 not applicable 8 13863 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.491 0 No days 3 days SUBJECT23.SKIN.491 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.491 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 3 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.500 0 No days 3 days SUBJECT23.STOOL.500 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.500 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 3 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.500.mzXML 11712.SUBJECT23.STOOL.500 not applicable 3 14011 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.509 0 No days 3 days SUBJECT24.ORAL.509 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.509 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 3 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.ORAL.509.mzXML 11712.SUBJECT24.ORAL.509 not applicable 8 13827 oral Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.516 0 No days 3 days SUBJECT24.SKIN.516 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.516 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 3 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.523 0 No days 3 days SUBJECT24.STOOL.523 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.523 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 3 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.523.mzXML 11712.SUBJECT24.STOOL.523 not applicable 3 14070 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.530 0 No days 3 days SUBJECT25.ORAL.530 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.530 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 3 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.530.mzXML 11712.SUBJECT25.ORAL.530 not applicable 8 13805 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.539 0 No days 3 days SUBJECT25.SKIN.539 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.539 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 3 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.548 0 No days 3 days SUBJECT25.STOOL.548 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.548 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 3 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.548.mzXML 11712.SUBJECT25.STOOL.548 not applicable 4 13631 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.557 3 Yes days 3 days SUBJECT26.ORAL.557 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.557 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 3 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.557.mzXML 11712.SUBJECT26.ORAL.557 not applicable 9 13900 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.563 3 Yes days 3 days SUBJECT26.SKIN.563 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.563 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 3 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.563.mzXML 11712.SUBJECT26.SKIN.563 not applicable 13 17161 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.569 3 Yes days 3 days SUBJECT26.STOOL.569 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.569 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 3 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.569.mzXML 11712.SUBJECT26.STOOL.569 not applicable 4 13618 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.ORAL.575 0 No days 3 days SUBJECT27.ORAL.575 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.ORAL.575 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 3 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL not_used 11712.SUBJECT27.ORAL.575 didn't inject 8 13796 not_used Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.SKIN.579 0 No days 3 days SUBJECT27.SKIN.579 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.SKIN.579 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 3 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.STOOL.582 0 No days 3 days SUBJECT27.STOOL.582 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.STOOL.582 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut No 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 3 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.STOOL.582.mzXML 11712.SUBJECT27.STOOL.582 not applicable 3 14037 fecal Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.586 0 No days 3 days SUBJECT28.ORAL.586 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.586 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 3 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL not_used 11712.SUBJECT28.ORAL.586 didn't inject 1 13384 not_used Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.594 0 No days 3 days SUBJECT28.SKIN.594 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.594 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 3 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.594.mzXML 11712.SUBJECT28.SKIN.594 not applicable 10 16774 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.601 0 No days 3 days SUBJECT28.STOOL.601 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.601 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 3 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.601.mzXML 11712.SUBJECT28.STOOL.601 not applicable 5 13703 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.ORAL.609 2 Yes days 3 days SUBJECT29.ORAL.609 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.ORAL.609 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 3 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.ORAL.609.mzXML 11712.SUBJECT29.ORAL.609 not applicable 8 13800 oral Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.SKIN.614 2 Yes days 3 days SUBJECT29.SKIN.614 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.SKIN.614 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 3 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.STOOL.618 2 Yes days 3 days SUBJECT29.STOOL.618 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.STOOL.618 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 3 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.STOOL.618.mzXML 11712.SUBJECT29.STOOL.618 not applicable 3 14012 fecal Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.622 0 No days 3 days SUBJECT3.ORAL.622 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.622 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 3 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.622.mzXML 11712.SUBJECT3.ORAL.622 not applicable 14 14334 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.630 0 No days 3 days SUBJECT3.SKIN.630 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.630 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 3 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.630.mzXML 11712.SUBJECT3.SKIN.630 not applicable 11 16877 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.656 2 Yes days 3 days SUBJECT30.ORAL.656 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.656 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 3 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.656.mzXML 11712.SUBJECT30.ORAL.656 not applicable 9 13906 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.673 2 Yes days 3 days SUBJECT30.SKIN.673 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.673 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 3 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.673.A.mzXML 11712.SUBJECT30.SKIN.673.A "Was a duplicate, verified which sample is which" 13 17185 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.688 2 Yes days 3 days SUBJECT30.STOOL.688 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.688 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 3 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.688.mzXML 11712.SUBJECT30.STOOL.688 not applicable 4 13654 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.700 2 Yes days 3 days SUBJECT31.ORAL.700 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.700 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 3 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.700.mzXML 11712.SUBJECT31.ORAL.700 not applicable 14 14319 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2131 2 Yes days 3 days SUBJECT31.SKIN.2131 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2131 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 3 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2131.mzXML 11712.SUBJECT31.SKIN.2131 not applicable 11 16881 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.710 2 Yes days 3 days SUBJECT31.STOOL.710 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.710 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 3 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.710.mzXML 11712.SUBJECT31.STOOL.710 not applicable 7 14091 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.ORAL.713 0 No days 3 days SUBJECT32.ORAL.713 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.ORAL.713 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 3 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.ORAL.713.mzXML 11712.SUBJECT32.ORAL.713 not applicable 2 13540 oral Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.SKIN.717 0 No days 3 days SUBJECT32.SKIN.717 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.SKIN.717 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 3 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.SKIN.717.mzXML 11712.SUBJECT32.SKIN.717 not applicable 12 17018 skin Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.STOOL.721 0 No days 3 days SUBJECT32.STOOL.721 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.STOOL.721 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 3 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.STOOL.721.mzXML 11712.SUBJECT32.STOOL.721 not applicable 4 13612 fecal Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.729 0 No days 3 days SUBJECT34.ORAL.729 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.729 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 3 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.729.mzXML 11712.SUBJECT34.ORAL.729 not applicable 2 13538 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.737 0 No days 3 days SUBJECT34.SKIN.737 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.737 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 3 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.737.mzXML 11712.SUBJECT34.SKIN.737 not applicable 12 17016 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.746 0 No days 3 days SUBJECT34.STOOL.746 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.746 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 3 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.746.mzXML 11712.SUBJECT34.STOOL.746 not applicable 7 14136 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.754 0 No days 3 days SUBJECT35.ORAL.754 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.754 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 3 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.754.mzXML 11712.SUBJECT35.ORAL.754 not applicable 2 13498 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.759 0 No days 3 days SUBJECT35.SKIN.759 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.759 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 3 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.759.mzXML 11712.SUBJECT35.SKIN.759 not applicable 12 16984 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.765 0 No days 3 days SUBJECT35.STOOL.765 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.765 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 3 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.STOOL.765.mzXML 11712.SUBJECT35.STOOL.765 not applicable 7 14111 fecal Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.772 2 Yes days 3 days SUBJECT36.ORAL.772 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.772 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 3 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.772.mzXML 11712.SUBJECT36.ORAL.772 not applicable 2 13527 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.778 2 Yes days 3 days SUBJECT36.SKIN.778 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.778 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 3 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.778.mzXML 11712.SUBJECT36.SKIN.778 not applicable 12 16972 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.784 2 Yes days 3 days SUBJECT36.STOOL.784 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.784 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 3 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.STOOL.784.mzXML 11712.SUBJECT36.STOOL.784 not applicable 4 13649 fecal Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.790 2 Yes days 3 days SUBJECT37.ORAL.790 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.790 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 3 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.790.mzXML 11712.SUBJECT37.ORAL.790 not applicable 1 13431 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.796 2 Yes days 3 days SUBJECT37.SKIN.796 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.796 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 3 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.796.mzXML 11712.SUBJECT37.SKIN.796 not applicable 12 16987 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.801 2 Yes days 3 days SUBJECT37.STOOL.801 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.801 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 3 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.801.mzXML 11712.SUBJECT37.STOOL.801 not applicable 7 14086 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.812 0 No days 3 days SUBJECT38.ORAL.812 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.812 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 3 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.812.mzXML 11712.SUBJECT38.ORAL.812 not applicable 1 13454 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.820 0 No days 3 days SUBJECT38.SKIN.820 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.820 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 3 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.820.mzXML 11712.SUBJECT38.SKIN.820 not applicable 12 17019 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.827 0 No days 3 days SUBJECT38.STOOL.827 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.827 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 3 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.827.mzXML 11712.SUBJECT38.STOOL.827 not applicable 5 13757 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.ORAL.829 0 No days 3 days SUBJECT39.ORAL.829 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.ORAL.829 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat oral human-oral No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 3 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.ORAL.829.mzXML 11712.SUBJECT39.ORAL.829 not applicable 1 13453 oral Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 447426 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.SKIN.833 0 No days 3 days SUBJECT39.SKIN.833 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.SKIN.833 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat skin human-skin No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 3 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.SKIN.833.mzXML 11712.SUBJECT39.SKIN.833 not applicable 12 16982 skin Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 539655 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.STOOL.837 0 No days 3 days SUBJECT39.STOOL.837 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.STOOL.837 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat stool human-gut No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 3 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.STOOL.837.mzXML 11712.SUBJECT39.STOOL.837 not applicable 5 13686 fecal Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected Yes Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 408170 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.1225 0 No days 3 days SUBJECT4.ORAL.1225 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.1225 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 3 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.1225.mzXML 11712.SUBJECT4.ORAL.1225 not applicable 14 14333 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.852 0 No days 3 days SUBJECT4.SKIN.852 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.852 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 3 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.852.mzXML 11712.SUBJECT4.SKIN.852 not applicable 11 16886 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.863 0 No days 3 days SUBJECT4.STOOL.863 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.863 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 3 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.863.mzXML 11712.SUBJECT4.STOOL.863 not applicable 6 14206 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.883 5 Yes days 3 days SUBJECT40.ORAL.883 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.883 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.883.mzXML 11712.SUBJECT40.ORAL.883 not applicable 1 13367 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.903 5 Yes days 3 days SUBJECT40.SKIN.903 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.903 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.903.mzXML 11712.SUBJECT40.SKIN.903 not applicable 12 16963 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.922 5 Yes days 3 days SUBJECT40.STOOL.922 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.922 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 3 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.922.mzXML 11712.SUBJECT40.STOOL.922 not applicable 5 13711 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.946 0 No days 3 days SUBJECT41.ORAL.946 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.946 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 3 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.946.mzXML 11712.SUBJECT41.ORAL.946 not applicable 2 13513 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.962 0 No days 3 days SUBJECT41.SKIN.962 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.962 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 3 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.962.mzXML 11712.SUBJECT41.SKIN.962 not applicable 12 17001 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.978 0 No days 3 days SUBJECT41.STOOL.978 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.978 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 3 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.978.mzXML 11712.SUBJECT41.STOOL.978 not applicable 5 13684 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.986 0 No days 3 days SUBJECT42.ORAL.986 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.986 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 3 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.986.mzXML 11712.SUBJECT42.ORAL.986 not applicable 2 13560 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1001 0 No days 3 days SUBJECT42.SKIN.1001 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1001 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 3 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1001.mzXML 11712.SUBJECT42.SKIN.1001 not applicable 10 16818 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1016 0 No days 3 days SUBJECT42.STOOL.1016 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1016 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 3 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL not_used 11712.SUBJECT42.STOOL.1016 didn't inject 6 14164 not_used Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1041 5 Yes days 3 days SUBJECT43.ORAL.1041 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1041 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 3 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1041.mzXML 11712.SUBJECT43.ORAL.1041 not applicable 2 13523 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1061 5 Yes days 3 days SUBJECT43.SKIN.1061 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1061 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 3 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1061.mzXML 11712.SUBJECT43.SKIN.1061 not applicable 10 16730 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1081 5 Yes days 3 days SUBJECT43.STOOL.1081 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1081 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 3 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1081.mzXML 11712.SUBJECT43.STOOL.1081 not applicable 5 13765 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT48.STOOL.1250 0 No days 3 days SUBJECT48.STOOL.1250 No Yes Yes 8 0.38 2 missing: not collected 6 days 35 weeks missing: not collected not applicable 50 cm 2890 grams 11.56 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:55:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2730 grams c-section SUBJECT48.STOOL.1250 25.60553633 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.85 20 Calories per ounce 40.83044983 mL/kg/day 3 days neonate Homo sapiens 11712-48 9606 20 hours Yes No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 6 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses Hispanic 15.22491349 mL/kg/day 444 mL 0 mL 264 mL 11712.SUBJECT48.STOOL.1250.mzXML 11712.SUBJECT48.STOOL.1250 not applicable 16 14258 fecal Singleton 2690 grams missing: not collected No Donor human milk No missing: not collected 6.920415225 -5.53633218 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected not applicable not applicable 11712.SUBJECT5.ORAL.1084 0 No days 3 days SUBJECT5.ORAL.1084 Yes Yes Yes 9 0.25 1 missing: not collected 5 days 35 weeks missing: not collected not applicable 51 cm 3265 g 12.55 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3115 grams c-section SUBJECT5.ORAL.1084 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 31.39356815 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.64 20 Calories per ounce 3.062787136 mL/kg/day 3 days neonate Homo sapiens 11712-5 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 28 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 1 doses latino 3.062787136 mL/kg/day 0 mL 410 mL 40 mL 11712.SUBJECT5.ORAL.1084.mzXML 11712.SUBJECT5.ORAL.1084 not applicable 14 14383 oral Singleton 3105 grams missing: not collected No Formula No missing: not collected 4.900459418 -4.594180704 91.11111111 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT5.SKIN.1086 0 No days 3 days SUBJECT5.SKIN.1086 Yes Yes Yes 9 0.25 1 missing: not collected 5 days 35 weeks missing: not collected not applicable 51 cm 3265 g 12.55 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3115 grams c-section SUBJECT5.SKIN.1086 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 31.39356815 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.64 20 Calories per ounce 3.062787136 mL/kg/day 3 days neonate Homo sapiens 11712-5 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 28 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 1 doses latino 3.062787136 mL/kg/day 0 mL 410 mL 40 mL 11712.SUBJECT5.SKIN.1086.mzXML 11712.SUBJECT5.SKIN.1086 not applicable 11 16841 skin Singleton 3105 grams missing: not collected No Formula No missing: not collected 4.900459418 -4.594180704 91.11111111 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.ORAL.1089 0 No days 3 days SUBJECT6.ORAL.1089 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.ORAL.1089 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 3 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.ORAL.1089.mzXML 11712.SUBJECT6.ORAL.1089 not applicable 1 13391 oral Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.SKIN.1094 0 No days 3 days SUBJECT6.SKIN.1094 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.SKIN.1094 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 3 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.SKIN.1094.mzXML 11712.SUBJECT6.SKIN.1094 not applicable 12 17025 skin Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.STOOL.1099 0 No days 3 days SUBJECT6.STOOL.1099 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.STOOL.1099 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 3 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.STOOL.1098.A.mzXML 11712.SUBJECT6.STOOL.1098.A "Was a duplicate, verified which sample is which" 5 13760 fecal Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.ORAL.1104 0 No days 3 days SUBJECT7.ORAL.1104 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.ORAL.1104 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat oral human-oral No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 3 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.ORAL.1104.mzXML 11712.SUBJECT7.ORAL.1104 not applicable 2 13552 oral Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.SKIN.1109 0 No days 3 days SUBJECT7.SKIN.1109 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.SKIN.1109 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat skin human-skin No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 3 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.SKIN.1109.mzXML 11712.SUBJECT7.SKIN.1109 not applicable 12 16932 skin Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.STOOL.1113 0 No days 3 days SUBJECT7.STOOL.1113 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.STOOL.1113 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat stool human-gut No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 3 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.STOOL.1113.mzXML 11712.SUBJECT7.STOOL.1113 not applicable 4 13659 fecal Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1128 2 Yes days 3 days SUBJECT8.ORAL.1128 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1128 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 3 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1128.mzXML 11712.SUBJECT8.ORAL.1128 not applicable 8 13835 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1145 2 Yes days 3 days SUBJECT8.SKIN.1145 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1145 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 3 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1145.mzXML 11712.SUBJECT8.SKIN.1145 not applicable 15 17071 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1161 2 Yes days 3 days SUBJECT8.STOOL.1161 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1161 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 3 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1161.mzXML 11712.SUBJECT8.STOOL.1161 not applicable 4 13613 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1168 2 Yes days 3 days SUBJECT9.ORAL.1168 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1168 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 3 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1168.mzXML 11712.SUBJECT9.ORAL.1168 not applicable 8 13848 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1187 2 Yes days 3 days SUBJECT9.SKIN.1187 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1187 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 3 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1187.mzXML 11712.SUBJECT9.SKIN.1187 not applicable 11 16852 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1207 2 Yes days 3 days SUBJECT9.STOOL.1207 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1207 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 3 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1207.mzXML 11712.SUBJECT9.STOOL.1207 not applicable 5 13701 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.3 0 No days 4 days SUBJECT1.ORAL.3 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.3 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 4 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.3.mzXML 11712.SUBJECT1.ORAL.3 not applicable 14 14378 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.13 0 No days 4 days SUBJECT1.SKIN.13 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.13 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 4 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.13.mzXML 11712.SUBJECT1.SKIN.13 not applicable 11 16838 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.22 0 No days 4 days SUBJECT1.STOOL.22 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.22 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 4 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.22.mzXML 11712.SUBJECT1.STOOL.22 not applicable 6 14159 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.33 0 No days 4 days SUBJECT10.ORAL.33 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.33 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 4 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.33.mzXML 11712.SUBJECT10.ORAL.33 not applicable 14 14321 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.41 0 No days 4 days SUBJECT10.SKIN.41 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.41 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 4 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.41.mzXML 11712.SUBJECT10.SKIN.41 not applicable 11 16837 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.48 0 No days 4 days SUBJECT10.STOOL.48 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.48 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 4 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.48.mzXML 11712.SUBJECT10.STOOL.48 not applicable 6 14156 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.ORAL.56 0 No days 4 days SUBJECT11.ORAL.56 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.ORAL.56 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 4 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.ORAL.56.mzXML 11712.SUBJECT11.ORAL.56 not applicable 14 14352 oral Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.SKIN.60 0 No days 4 days SUBJECT11.SKIN.60 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.SKIN.60 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 4 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.SKIN.60.mzXML 11712.SUBJECT11.SKIN.60 not applicable 11 16915 skin Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT11.STOOL.63 0 No days 4 days SUBJECT11.STOOL.63 No Yes Yes 9 0.38 1 missing: not collected 6 days 35 weeks missing: not collected not applicable 46 cm 2490 g 11.77 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2396 grams vaginal SUBJECT11.STOOL.63 7.831325301 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 2 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.59 20 Calories per ounce 18.42369478 mL/kg/day 4 days neonate Homo sapiens 11712-11 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 1 doses white 10.59236948 mL/kg/day 78 mL 0 mL 105.5 mL 11712.SUBJECT11.STOOL.63.mzXML 11712.SUBJECT11.STOOL.63 not applicable 6 14242 fecal Singleton 2396 grams missing: not collected No Donor human milk No missing: not collected 3.775100402 -3.775100402 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.66 0 No days 4 days SUBJECT12.ORAL.66 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.66 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 4 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.66.mzXML 11712.SUBJECT12.ORAL.66 not applicable 2 13500 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.81 0 No days 4 days SUBJECT12.SKIN.81 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.81 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 4 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL not_used 11712.SUBJECT12.SKIN.81 didn't inject 12 17013 not_used Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.96 0 No days 4 days SUBJECT12.STOOL.96 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.96 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 4 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.96.mzXML 11712.SUBJECT12.STOOL.96 not applicable 5 13710 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.119.A 0 No days 4 days SUBJECT14.ORAL.119.A Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.119.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 4 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.119.A.mzXML 11712.SUBJECT14.ORAL.119.A "Was a duplicate, verified which sample is which" 1 13397 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.129 0 No days 4 days SUBJECT14.SKIN.129 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.129 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 4 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.129.mzXML 11712.SUBJECT14.SKIN.129 not applicable 10 16779 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.1228 0 No days 4 days SUBJECT14.STOOL.1228 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 19:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.1228 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 4 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.1228.mzXML 11712.SUBJECT14.STOOL.1228 not applicable 6 14222 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.156 0 No days 4 days SUBJECT16.ORAL.156 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.156 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 4 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.156.mzXML 11712.SUBJECT16.ORAL.156 not applicable 1 13437 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.173 0 No days 4 days SUBJECT16.SKIN.173 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.173 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 4 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.173.mzXML 11712.SUBJECT16.SKIN.173 not applicable 10 16822 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.190 0 No days 4 days SUBJECT16.STOOL.190 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.190 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 5 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.190.mzXML 11712.SUBJECT16.STOOL.190 not applicable 6 14198 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.205 7 Yes days 4 days SUBJECT17.ORAL.205 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.205 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 4 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.205.mzXML 11712.SUBJECT17.ORAL.205 not applicable 1 13408 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.227 7 Yes days 4 days SUBJECT17.SKIN.227 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.227 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 4 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.227.mzXML 11712.SUBJECT17.SKIN.227 not applicable 10 16800 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.249 7 Yes days 4 days SUBJECT17.STOOL.249 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.249 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 4 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.249.mzXML 11712.SUBJECT17.STOOL.249 not applicable 6 14149 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.272 2 Yes days 4 days SUBJECT18.ORAL.272 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.272 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 4 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.272.mzXML 11712.SUBJECT18.ORAL.272 not applicable 1 13393 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.294 2 Yes days 4 days SUBJECT18.SKIN.294 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.294 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 4 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.294.mzXML 11712.SUBJECT18.SKIN.294 not applicable 10 16739 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.316 2 Yes days 4 days SUBJECT18.STOOL.316 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.316 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 4 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.316.mzXML 11712.SUBJECT18.STOOL.316 not applicable 5 13766 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.337 0 No days 4 days SUBJECT19.ORAL.337 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.337 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.337.mzXML 11712.SUBJECT19.ORAL.337 not applicable 8 13817 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.352 0 No days 4 days SUBJECT19.SKIN.352 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.352 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.352.mzXML 11712.SUBJECT19.SKIN.352 not applicable 15 17036 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.367 0 No days 4 days SUBJECT19.STOOL.367 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.367 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.367.mzXML 11712.SUBJECT19.STOOL.367 not applicable 4 13643 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.394 0 No days 4 days SUBJECT20.ORAL.394 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.394 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.394.mzXML 11712.SUBJECT20.ORAL.394 not applicable 8 13806 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.409 0 No days 4 days SUBJECT20.SKIN.409 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.409 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.409.mzXML 11712.SUBJECT20.SKIN.409 not applicable 13 17193 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.423 0 No days 4 days SUBJECT20.STOOL.423 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.423 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.423.mzXML 11712.SUBJECT20.STOOL.423 not applicable 4 13597 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.439 7 Yes days 4 days SUBJECT21.ORAL.439 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.439 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 4 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.439.mzXML 11712.SUBJECT21.ORAL.439 not applicable 8 13829 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.449 7 Yes days 4 days SUBJECT21.SKIN.449 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.449 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 4 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.449.mzXML 11712.SUBJECT21.SKIN.449 not applicable 10 16782 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.459 7 Yes days 4 days SUBJECT21.STOOL.459 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.459 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 4 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.459.mzXML 11712.SUBJECT21.STOOL.459 not applicable 6 14173 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.ORAL.469 0 No days 4 days SUBJECT22.ORAL.469 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.ORAL.469 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 4 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.ORAL.469.mzXML 11712.SUBJECT22.ORAL.469 not applicable 8 13875 oral Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.SKIN.474 0 No days 4 days SUBJECT22.SKIN.474 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.SKIN.474 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 4 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.SKIN.474.mzXML 11712.SUBJECT22.SKIN.474 not applicable 15 17124 skin Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.STOOL.478 0 No days 4 days SUBJECT22.STOOL.478 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.STOOL.478 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 4 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.STOOL.478.mzXML 11712.SUBJECT22.STOOL.478 not applicable 3 14062 fecal Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.483 0 No days 4 days SUBJECT23.ORAL.483 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.483 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 4 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.483.mzXML 11712.SUBJECT23.ORAL.483 not applicable 8 13857 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.492 0 No days 4 days SUBJECT23.SKIN.492 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.492 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 4 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.501 0 No days 4 days SUBJECT23.STOOL.501 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.501 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 4 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.501.mzXML 11712.SUBJECT23.STOOL.501 not applicable 3 14047 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.510 0 No days 4 days SUBJECT24.ORAL.510 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.510 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 4 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.ORAL.510.mzXML 11712.SUBJECT24.ORAL.510 not applicable 8 13861 oral Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.517 0 No days 4 days SUBJECT24.SKIN.517 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.517 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 4 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.524 0 No days 4 days SUBJECT24.STOOL.524 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.524 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 4 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.524.mzXML 11712.SUBJECT24.STOOL.524 not applicable 3 14008 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.531 0 No days 4 days SUBJECT25.ORAL.531 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.531 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 4 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.531.mzXML 11712.SUBJECT25.ORAL.531 not applicable 8 13839 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.540 0 No days 4 days SUBJECT25.SKIN.540 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.540 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 4 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.549 0 No days 4 days SUBJECT25.STOOL.549 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.549 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 4 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.549.mzXML 11712.SUBJECT25.STOOL.549 not applicable 3 13981 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.558 3 Yes days 4 days SUBJECT26.ORAL.558 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.558 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 4 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.558.mzXML 11712.SUBJECT26.ORAL.558 not applicable 9 13961 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.564 3 Yes days 4 days SUBJECT26.SKIN.564 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.564 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 4 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.564.mzXML 11712.SUBJECT26.SKIN.564 not applicable 13 17181 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.570 3 Yes days 4 days SUBJECT26.STOOL.570 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.570 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 4 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.570.mzXML 11712.SUBJECT26.STOOL.570 not applicable 4 13640 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.ORAL.576 0 No days 4 days SUBJECT27.ORAL.576 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.ORAL.576 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat oral human-oral Yes 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 4 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.ORAL.576.mzXML 11712.SUBJECT27.ORAL.576 not applicable 8 13813 oral Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.SKIN.580 0 No days 4 days SUBJECT27.SKIN.580 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.SKIN.580 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat skin human-skin Yes 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 4 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT27.STOOL.583 0 No days 4 days SUBJECT27.STOOL.583 Yes Yes Yes 9 0.35 1 missing: not collected 3 days 36 weeks missing: not collected not applicable 48.5 cm 2453 g 10.43 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2360 grams vaginal SUBJECT27.STOOL.583 28.12882185 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 4 days missing: not collected 4 days not applicable days not applicable days not applicable days 292 0 urban biome human-associated habitat stool human-gut Yes 5.09580106 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.44 20 Calories per ounce 29.70852018 mL/kg/day 4 days neonate Homo sapiens 11712-27 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses Asian 1.579698329 mL/kg/day 276 mL 50 mL 15.5 mL 11712.SUBJECT27.STOOL.583.mzXML 11712.SUBJECT27.STOOL.583 not applicable 4 13617 fecal Singleton 2360 grams missing: not collected Yes Donor human milk No missing: not collected 3.791275989 -3.791275989 14.64128843 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 3 No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 3 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.587 0 No days 4 days SUBJECT28.ORAL.587 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.587 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 4 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.ORAL.587.mzXML 11712.SUBJECT28.ORAL.587 not applicable 2 13480 oral Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.595 0 No days 4 days SUBJECT28.SKIN.595 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.595 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 4 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.595.mzXML 11712.SUBJECT28.SKIN.595 not applicable 10 16750 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.602 0 No days 4 days SUBJECT28.STOOL.602 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.602 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 4 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.602.mzXML 11712.SUBJECT28.STOOL.602 not applicable 6 14227 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.ORAL.610 2 Yes days 4 days SUBJECT29.ORAL.610 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.ORAL.610 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 4 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.ORAL.610.mzXML 11712.SUBJECT29.ORAL.610 not applicable 9 13886 oral Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.SKIN.615 2 Yes days 4 days SUBJECT29.SKIN.615 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.SKIN.615 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 4 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.STOOL.619 2 Yes days 4 days SUBJECT29.STOOL.619 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.STOOL.619 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 4 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.STOOL.619.mzXML 11712.SUBJECT29.STOOL.619 not applicable 3 14005 fecal Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.636 0 No days 4 days SUBJECT3.STOOL.636 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.636 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 4 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.STOOL.636.mzXML 11712.SUBJECT3.STOOL.636 not applicable 7 14101 fecal Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.657 2 Yes days 4 days SUBJECT30.ORAL.657 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.657 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 4 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.657.mzXML 11712.SUBJECT30.ORAL.657 not applicable 9 13908 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.674 2 Yes days 4 days SUBJECT30.SKIN.674 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.674 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 4 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.674.mzXML 11712.SUBJECT30.SKIN.674 not applicable 13 17147 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.689 2 Yes days 4 days SUBJECT30.STOOL.689 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.689 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 4 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.689.mzXML 11712.SUBJECT30.STOOL.689 not applicable 4 13604 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.701 2 Yes days 4 days SUBJECT31.ORAL.701 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.701 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 4 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.701.mzXML 11712.SUBJECT31.ORAL.701 not applicable 14 14348 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2130 2 Yes days 4 days SUBJECT31.SKIN.2130 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2130 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 4 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2130.mzXML 11712.SUBJECT31.SKIN.2130 not applicable 11 16869 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.ORAL.714 0 No days 4 days SUBJECT32.ORAL.714 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.ORAL.714 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 4 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.ORAL.714.mzXML 11712.SUBJECT32.ORAL.714 not applicable 1 13399 oral Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.SKIN.718 0 No days 4 days SUBJECT32.SKIN.718 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.SKIN.718 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 4 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL not_used 11712.SUBJECT32.SKIN.718 didn't inject 12 17004 not_used Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT32.STOOL.722 0 No days 4 days SUBJECT32.STOOL.722 No Yes Yes 9 not applicable 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 47 cm 2865 g 12.97 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2720 grams vaginal SUBJECT32.STOOL.722 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 4 days not applicable days not applicable days 3 days 292 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 22.29493892 mL/kg/day 4 days neonate Homo sapiens 11712-32 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 4 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 22.29493892 mL/kg/day 0 mL 0 mL 255.5 mL 11712.SUBJECT32.STOOL.722.mzXML 11712.SUBJECT32.STOOL.722 not applicable 5 13724 fecal Singleton 2690 grams missing: not collected No Formula No missing: not collected 6.108202443 -5.061082024 0 missing: not collected No UCSDMI No Yes 11712 Formula No not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.730 0 No days 4 days SUBJECT34.ORAL.730 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.730 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 4 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.730.mzXML 11712.SUBJECT34.ORAL.730 not applicable 2 13539 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.738 0 No days 4 days SUBJECT34.SKIN.738 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.738 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 4 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.738.mzXML 11712.SUBJECT34.SKIN.738 not applicable 12 16966 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.747 0 No days 4 days SUBJECT34.STOOL.747 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.747 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 4 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.747.mzXML 11712.SUBJECT34.STOOL.747 not applicable 4 13600 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.755 0 No days 4 days SUBJECT35.ORAL.755 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.755 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 4 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.755.mzXML 11712.SUBJECT35.ORAL.755 not applicable 2 13488 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.760 0 No days 4 days SUBJECT35.SKIN.760 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.760 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 4 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.760.mzXML 11712.SUBJECT35.SKIN.760 not applicable 12 16960 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.766 0 No days 4 days SUBJECT35.STOOL.766 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.766 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 4 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.STOOL.766.mzXML 11712.SUBJECT35.STOOL.766 not applicable 5 13685 fecal Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.773 2 Yes days 4 days SUBJECT36.ORAL.773 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.773 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 4 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.773.mzXML 11712.SUBJECT36.ORAL.773 not applicable 1 13427 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.779 2 Yes days 4 days SUBJECT36.SKIN.779 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.779 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 4 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.779.mzXML 11712.SUBJECT36.SKIN.779 not applicable 12 17021 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.785 2 Yes days 4 days SUBJECT36.STOOL.785 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.785 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 4 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.STOOL.785.mzXML 11712.SUBJECT36.STOOL.785 not applicable 7 14120 fecal Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.791 2 Yes days 4 days SUBJECT37.ORAL.791 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.791 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 4 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.791.mzXML 11712.SUBJECT37.ORAL.791 not applicable 2 13528 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.797 2 Yes days 4 days SUBJECT37.SKIN.797 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.797 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 4 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.797.mzXML 11712.SUBJECT37.SKIN.797 not applicable 12 16999 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.802 2 Yes days 4 days SUBJECT37.STOOL.802 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.802 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 4 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.802.mzXML 11712.SUBJECT37.STOOL.802 not applicable 7 14128 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.805 0 No days 4 days SUBJECT38.ORAL.805 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.805 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 4 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.805.mzXML 11712.SUBJECT38.ORAL.805 not applicable 2 13476 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.813 0 No days 4 days SUBJECT38.SKIN.813 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.813 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 4 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.813.mzXML 11712.SUBJECT38.SKIN.813 not applicable 12 16994 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.ORAL.830 0 No days 4 days SUBJECT39.ORAL.830 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.ORAL.830 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat oral human-oral No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 4 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.ORAL.830.mzXML 11712.SUBJECT39.ORAL.830 not applicable 1 13430 oral Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 447426 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.SKIN.834 0 No days 4 days SUBJECT39.SKIN.834 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.SKIN.834 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat skin human-skin No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 4 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.SKIN.834.mzXML 11712.SUBJECT39.SKIN.834 not applicable 12 16969 skin Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 539655 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.STOOL.838 0 No days 4 days SUBJECT39.STOOL.838 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.STOOL.838 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat stool human-gut No 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 4 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.STOOL.838.mzXML 11712.SUBJECT39.STOOL.838 not applicable 5 13770 fecal Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 408170 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.1237 5 Yes days 4 days SUBJECT40.ORAL.1237 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.1237 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral missing: not collected 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.1237.mzXML 11712.SUBJECT40.ORAL.1237 not applicable 2 13549 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.904 5 Yes days 4 days SUBJECT40.SKIN.904 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.904 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL not_used 11712.SUBJECT40.SKIN.904 didn't inject 12 17020 not_used Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.923 5 Yes days 4 days SUBJECT40.STOOL.923 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.923 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 4 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.923.mzXML 11712.SUBJECT40.STOOL.923 not applicable 5 13699 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.931 0 No days 4 days SUBJECT41.ORAL.931 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.931 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 4 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.931.mzXML 11712.SUBJECT41.ORAL.931 not applicable 2 13557 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.947 0 No days 4 days SUBJECT41.SKIN.947 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.947 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 4 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.947.mzXML 11712.SUBJECT41.SKIN.947 not applicable 10 16821 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.963 0 No days 4 days SUBJECT41.STOOL.963 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.963 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 4 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.963.mzXML 11712.SUBJECT41.STOOL.963 not applicable 5 13752 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.987 0 No days 4 days SUBJECT42.ORAL.987 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:35:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.987 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 4 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.987.mzXML 11712.SUBJECT42.ORAL.987 not applicable 2 13496 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1002 0 No days 4 days SUBJECT42.SKIN.1002 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:35:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1002 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 4 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1002.mzXML 11712.SUBJECT42.SKIN.1002 not applicable 10 16806 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1017 0 No days 4 days SUBJECT42.STOOL.1017 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:35:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1017 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 4 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1017.mzXML 11712.SUBJECT42.STOOL.1017 not applicable 5 13704 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1042 5 Yes days 4 days SUBJECT43.ORAL.1042 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1042 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 4 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1042.mzXML 11712.SUBJECT43.ORAL.1042 not applicable 2 13524 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1062 5 Yes days 4 days SUBJECT43.SKIN.1062 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1062 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 4 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1062.mzXML 11712.SUBJECT43.SKIN.1062 not applicable 10 16819 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1082 5 Yes days 4 days SUBJECT43.STOOL.1082 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1082 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 4 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1082.mzXML 11712.SUBJECT43.STOOL.1082 not applicable 6 14152 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT46.STOOL.1244 0 No days 4 days SUBJECT46.STOOL.1244 No Yes Yes 9 0.33 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2805 grams 11.93 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2610 grams c-section SUBJECT46.STOOL.1244 25.36287242 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 4 days not applicable days 4 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 72.72727273 mL/kg/day 4 days neonate Homo sapiens 11712-46 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 43 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 47.36440031 mL/kg/day 498 mL 0 mL 930 mL 11712.SUBJECT46.STOOL.1244.mzXML 11712.SUBJECT46.STOOL.1244 not applicable 16 14275 fecal Singleton 2540 grams missing: not collected No Donor human milk No missing: not collected 9.44741533 -6.951871658 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT47.STOOL.1247 0 No days 4 days SUBJECT47.STOOL.1247 No Yes Yes 8 0.34 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 51 cm 2735 grams 10.51 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:05:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2640 grams vaginal SUBJECT47.STOOL.1247 36.5630713 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 3 days not applicable days 3 days 5 days 105 2 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.36 20 Calories per ounce 72.34264821 mL/kg/day 4 days neonate Homo sapiens 11712-47 9606 2 hours No No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 31 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses Graduate school 1 doses 0 doses "White, non-hispanic" 35.77957691 mL/kg/day 700 mL 0 mL 685 mL 11712.SUBJECT47.STOOL.1247.mzXML 11712.SUBJECT47.STOOL.1247 not applicable 16 14266 fecal Singleton 2580 grams missing: not collected No Donor human milk No missing: not collected 5.667276051 -3.473491773 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT49.STOOL.1254 0 No days 4 days SUBJECT49.STOOL.1254 No Yes Yes 8 0.25 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2405 grams 10.22 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2320 grams c-section SUBJECT49.STOOL.1254 32.84823285 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.28 20 Calories per ounce 52.05821206 mL/kg/day 4 days neonate Homo sapiens 11712-49 9606 9 hours No No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 3 doses Black 19.20997921 mL/kg/day 395 mL 0 mL 231 mL 11712.SUBJECT49.STOOL.1254.mzXML 11712.SUBJECT49.STOOL.1254 not applicable 16 14302 fecal Singleton 2280 grams missing: not collected No Donor human milk No missing: not collected 5.197505198 -3.534303534 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT50.STOOL.1256 0 No days 4 days SUBJECT50.STOOL.1256 Yes Yes Yes 9 not applicable 2 missing: not collected 6 days 35 weeks missing: not collected not applicable 46.5 cm 2225 grams 10.29 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2120 grams vaginal SUBJECT50.STOOL.1256 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0.898876404 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 19.59550562 mL/kg/day 4 days neonate Homo sapiens 11712-50 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 19.59550562 mL/kg/day 0 mL 10 mL 218 mL 11712.SUBJECT50.STOOL.1256.mzXML 11712.SUBJECT50.STOOL.1256 not applicable 16 14296 fecal Twin 2100 grams missing: not collected No Formula No missing: not collected 5.617977528 -4.719101124 4.385964912 missing: not collected No RCHSD Yes No 11712 Formula No not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT51.STOOL.1259 0 No days 4 days SUBJECT51.STOOL.1259 Yes Yes Yes 9 0.21 2 missing: not collected 4 days 34 weeks missing: not collected not applicable 46.5 cm 2540 grams 11.75 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2415 grams vaginal SUBJECT51.STOOL.1259 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 27.61529809 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 20 Calories per ounce 76.60292463 mL/kg/day 4 days neonate Homo sapiens 11712-51 9606 1 hours No No 1 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 3 doses "White, non-hispanic" 76.60292463 mL/kg/day 0 mL 491 mL 1362 mL 11712.SUBJECT51.STOOL.1259.mzXML 11712.SUBJECT51.STOOL.1259 not applicable 16 14270 fecal Singleton 2350 grams missing: not collected No Formula No missing: not collected 7.480314961 -4.921259843 26.49757151 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT52.STOOL.1338 0 No days 4 days SUBJECT52.STOOL.1338 No Yes Yes 9 0.1 2 missing: not collected 5 days 35 weeks missing: not collected not applicable 52 cm 3365 grams 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 3080 grams c-section SUBJECT52.STOOL.1338 27.51857355 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.11 20 Calories per ounce 38.75185736 mL/kg/day 4 days neonate Homo sapiens 11712-52 9606 5 hours Yes No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 31 years 0 doses 0 doses 1 doses 1 doses No 0 doses Graduate school 0 doses 0 doses "White, non-hispanic" 11.2332838 mL/kg/day 463 mL 0 mL 189 mL 11712.SUBJECT52.STOOL.1338.mzXML 11712.SUBJECT52.STOOL.1338 not applicable 16 14248 fecal Singleton 3060 grams missing: not collected No Donor human milk No missing: not collected 9.063893016 -8.469539376 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT6.ORAL.1090 0 No days 4 days SUBJECT6.ORAL.1090 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.ORAL.1090 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 4 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.ORAL.1090.mzXML 11712.SUBJECT6.ORAL.1090 not applicable 1 13456 oral Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.SKIN.1095 0 No days 4 days SUBJECT6.SKIN.1095 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.SKIN.1095 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 4 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.SKIN.1095.mzXML 11712.SUBJECT6.SKIN.1095 not applicable 12 16949 skin Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.STOOL.1100 0 No days 4 days SUBJECT6.STOOL.1100 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.STOOL.1100 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut No 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 4 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.STOOL.1100.mzXML 11712.SUBJECT6.STOOL.1100 not applicable 5 13771 fecal Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.ORAL.1105 0 No days 4 days SUBJECT7.ORAL.1105 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.ORAL.1105 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat oral human-oral No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 4 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.ORAL.1105.mzXML 11712.SUBJECT7.ORAL.1105 not applicable 1 13432 oral Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.SKIN.1226 0 No days 4 days SUBJECT7.SKIN.1226 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.SKIN.1226 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 4 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.SKIN.1226.mzXML 11712.SUBJECT7.SKIN.1226 not applicable 12 16950 skin Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.STOOL.1114 0 No days 4 days SUBJECT7.STOOL.1114 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.STOOL.1114 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat stool human-gut No 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 4 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.STOOL.1114.mzXML 11712.SUBJECT7.STOOL.1114 not applicable 4 13588 fecal Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1129 2 Yes days 4 days SUBJECT8.ORAL.1129 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1129 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 4 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1129.mzXML 11712.SUBJECT8.ORAL.1129 not applicable 1 13440 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1146 2 Yes days 4 days SUBJECT8.SKIN.1146 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1146 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 4 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1146.mzXML 11712.SUBJECT8.SKIN.1146 not applicable 12 17023 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1162 2 Yes days 4 days SUBJECT8.STOOL.1162 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1162 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 4 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1162.mzXML 11712.SUBJECT8.STOOL.1162 not applicable 5 13746 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1169 2 Yes days 4 days SUBJECT9.ORAL.1169 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1169 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 4 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1169.mzXML 11712.SUBJECT9.ORAL.1169 not applicable 14 14395 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1188 2 Yes days 4 days SUBJECT9.SKIN.1188 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1188 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 4 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1188.mzXML 11712.SUBJECT9.SKIN.1188 not applicable 15 17075 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1208 2 Yes days 4 days SUBJECT9.STOOL.1208 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1208 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 4 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1208.mzXML 11712.SUBJECT9.STOOL.1208 not applicable 3 13980 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.4 0 No days 5 days SUBJECT1.ORAL.4 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.4 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 5 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.4.mzXML 11712.SUBJECT1.ORAL.4 not applicable 14 14392 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.14 0 No days 5 days SUBJECT1.SKIN.14 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.14 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 5 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.14.mzXML 11712.SUBJECT1.SKIN.14 not applicable 11 16850 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.23 0 No days 5 days SUBJECT1.STOOL.23 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.23 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 5 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.23.mzXML 11712.SUBJECT1.STOOL.23 not applicable 6 14170 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.34 0 No days 5 days SUBJECT10.ORAL.34 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.34 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 5 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.34.mzXML 11712.SUBJECT10.ORAL.34 not applicable 14 14320 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.42 0 No days 5 days SUBJECT10.SKIN.42 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.42 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 5 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.42.mzXML 11712.SUBJECT10.SKIN.42 not applicable 11 16843 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.49 0 No days 5 days SUBJECT10.STOOL.49 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.49 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 5 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL not_used 11712.SUBJECT10.STOOL.49 didn't inject 6 14168 not_used Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.67 0 No days 5 days SUBJECT12.ORAL.67 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.67 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 5 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.67.mzXML 11712.SUBJECT12.ORAL.67 not applicable 8 13811 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.82 0 No days 5 days SUBJECT12.SKIN.82 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.82 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 5 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.82.mzXML 11712.SUBJECT12.SKIN.82 not applicable 15 17123 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.97 0 No days 5 days SUBJECT12.STOOL.97 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.97 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 5 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.97.mzXML 11712.SUBJECT12.STOOL.97 not applicable 3 14020 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.120 0 No days 5 days SUBJECT14.ORAL.120 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.120 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 5 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.120.mzXML 11712.SUBJECT14.ORAL.120 not applicable 2 13555 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.130 0 No days 5 days SUBJECT14.SKIN.130 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.130 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 5 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.130.mzXML 11712.SUBJECT14.SKIN.130 not applicable 10 16746 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.139 0 No days 5 days SUBJECT14.STOOL.139 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.139 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 5 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.139.mzXML 11712.SUBJECT14.STOOL.139 not applicable 6 14226 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.157 0 No days 5 days SUBJECT16.ORAL.157 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.157 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 5 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.157.mzXML 11712.SUBJECT16.ORAL.157 not applicable 8 13859 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.174 0 No days 5 days SUBJECT16.SKIN.174 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.174 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 5 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.174.mzXML 11712.SUBJECT16.SKIN.174 not applicable 15 17068 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.191 0 No days 5 days SUBJECT16.STOOL.191 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.191 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 6 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.191.mzXML 11712.SUBJECT16.STOOL.191 not applicable 6 14197 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.206 7 Yes days 5 days SUBJECT17.ORAL.206 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.206 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 5 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.206.mzXML 11712.SUBJECT17.ORAL.206 not applicable 2 13466 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.228 7 Yes days 5 days SUBJECT17.SKIN.228 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.228 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 5 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.228.mzXML 11712.SUBJECT17.SKIN.228 not applicable 10 16731 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.250 7 Yes days 5 days SUBJECT17.STOOL.250 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.250 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 5 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.250.mzXML 11712.SUBJECT17.STOOL.250 not applicable 6 14236 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.273 2 Yes days 5 days SUBJECT18.ORAL.273 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.273 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 5 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL not_used 11712.SUBJECT18.ORAL.273 didn't inject 1 13405 not_used Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.295 2 Yes days 5 days SUBJECT18.SKIN.295 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.295 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 5 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.295.mzXML 11712.SUBJECT18.SKIN.295 not applicable 10 16763 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.317 2 Yes days 5 days SUBJECT18.STOOL.317 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.317 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 5 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.317.mzXML 11712.SUBJECT18.STOOL.317 not applicable 5 13751 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.338 0 No days 5 days SUBJECT19.ORAL.338 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.338 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.338.mzXML 11712.SUBJECT19.ORAL.338 not applicable 8 13851 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.353 0 No days 5 days SUBJECT19.SKIN.353 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.353 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.353.mzXML 11712.SUBJECT19.SKIN.353 not applicable 15 17112 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.368 0 No days 5 days SUBJECT19.STOOL.368 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.368 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.368.mzXML 11712.SUBJECT19.STOOL.368 not applicable 3 13987 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT2.ORAL.382 0 No days 5 days SUBJECT2.ORAL.382 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.ORAL.382 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 5 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.ORAL.382.mzXML 11712.SUBJECT2.ORAL.382 not applicable 14 14382 oral Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.SKIN.386 0 No days 5 days SUBJECT2.SKIN.386 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.SKIN.386 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 5 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.SKIN.386.mzXML 11712.SUBJECT2.SKIN.386 not applicable 11 16854 skin Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT2.STOOL.390 0 No days 5 days SUBJECT2.STOOL.390 No Yes Yes 9 0.13 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 2235 g 11.04 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2180 grams c-section SUBJECT2.STOOL.390 16.62938106 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 6 days not applicable days not applicable days 2 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.21 20 Calories per ounce 28.03877703 mL/kg/day 5 days neonate Homo sapiens 11712-2 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 11.40939597 mL/kg/day 223 mL 0 mL 153 mL 11712.SUBJECT2.STOOL.390.mzXML 11712.SUBJECT2.STOOL.390 not applicable 6 14157 fecal Triplet 2150 grams missing: not collected No Donor human milk No missing: not collected 3.803131991 -2.460850112 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.395 0 No days 5 days SUBJECT20.ORAL.395 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:54:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.395 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.ORAL.395 didn't inject 8 13879 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.1229 0 No days 5 days SUBJECT20.SKIN.1229 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:54:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.1229 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin missing: not collected 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.1229.mzXML 11712.SUBJECT20.SKIN.1229 not applicable 13 17190 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.424 0 No days 5 days SUBJECT20.STOOL.424 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:54:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.424 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not applicable not applicable not applicable not applicable not applicable not applicable Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.440 7 Yes days 5 days SUBJECT21.ORAL.440 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.440 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 5 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.440.mzXML 11712.SUBJECT21.ORAL.440 not applicable 8 13865 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.450 7 Yes days 5 days SUBJECT21.SKIN.450 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.450 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 5 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.450.mzXML 11712.SUBJECT21.SKIN.450 not applicable 15 17105 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.460 7 Yes days 5 days SUBJECT21.STOOL.460 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.460 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 5 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.460.mzXML 11712.SUBJECT21.STOOL.460 not applicable 6 14233 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.ORAL.470 0 No days 5 days SUBJECT22.ORAL.470 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.ORAL.470 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 5 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.ORAL.470.mzXML 11712.SUBJECT22.ORAL.470 not applicable 8 13789 oral Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.SKIN.475 0 No days 5 days SUBJECT22.SKIN.475 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.SKIN.475 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 5 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.SKIN.475.mzXML 11712.SUBJECT22.SKIN.475 not applicable 15 17101 skin Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT22.STOOL.479 0 No days 5 days SUBJECT22.STOOL.479 No Yes Yes 9 0.58 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 47.5 cm 2860 g 12.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2680 grams c-section SUBJECT22.STOOL.479 29.02097902 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 5 days 292 3 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 20 Calories per ounce 33.98601399 mL/kg/day 5 days neonate Homo sapiens 11712-22 9606 1 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 41 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses latino 4.965034965 mL/kg/day 415 mL 0 mL 71 mL 11712.SUBJECT22.STOOL.479.mzXML 11712.SUBJECT22.STOOL.479 not applicable 3 14060 fecal Singleton 2645 grams missing: not collected No Donor human milk No missing: not collected 7.517482517 -6.293706294 0 missing: not collected No UCSDMI No No 11712 Donor human milk No not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.484 0 No days 5 days SUBJECT23.ORAL.484 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.484 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 5 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.484.mzXML 11712.SUBJECT23.ORAL.484 not applicable 9 13974 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.493 0 No days 5 days SUBJECT23.SKIN.493 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.493 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 5 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable "duplicate sample, cannot determine which sample is which, did not use samples, 11712.SUBJECT23.SKIN.496.B.mzXML and 11712.SUBJECT23.SKIN.496.A.mzXML" not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.502 0 No days 5 days SUBJECT23.STOOL.502 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.502 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 5 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.502.mzXML 11712.SUBJECT23.STOOL.502 not applicable 4 13652 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.511 0 No days 5 days SUBJECT24.ORAL.511 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.511 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 5 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.ORAL.511.mzXML 11712.SUBJECT24.ORAL.511 not applicable 9 13975 oral Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.518 0 No days 5 days SUBJECT24.SKIN.518 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.518 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 5 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.525 0 No days 5 days SUBJECT24.STOOL.525 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.525 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 5 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.525.mzXML 11712.SUBJECT24.STOOL.525 not applicable 3 14040 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.532 0 No days 5 days SUBJECT25.ORAL.532 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.532 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 5 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.532.mzXML 11712.SUBJECT25.ORAL.532 not applicable 9 13966 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.541 0 No days 5 days SUBJECT25.SKIN.541 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.541 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 5 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.SKIN.541.mzXML 11712.SUBJECT25.SKIN.541 not applicable 13 17233 skin Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.550 0 No days 5 days SUBJECT25.STOOL.550 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.550 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 5 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.550.mzXML 11712.SUBJECT25.STOOL.550 not applicable 4 13670 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.559 3 Yes days 5 days SUBJECT26.ORAL.559 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.559 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 5 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.559.mzXML 11712.SUBJECT26.ORAL.559 not applicable 9 13929 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.565 3 Yes days 5 days SUBJECT26.SKIN.565 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.565 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 5 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.565.mzXML 11712.SUBJECT26.SKIN.565 not applicable 13 17210 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.571 3 Yes days 5 days SUBJECT26.STOOL.571 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.571 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 5 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.571.mzXML 11712.SUBJECT26.STOOL.571 not applicable 4 13603 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.588 0 No days 5 days SUBJECT28.ORAL.588 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.588 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 5 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT17.ORAL.218.B.mzXML 11712.SUBJECT17.ORAL.218.B "Was a duplicate, verified which sample is which" 1 13459 oral Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.596 0 No days 5 days SUBJECT28.SKIN.596 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.596 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 5 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.596.mzXML 11712.SUBJECT28.SKIN.596 not applicable 10 16741 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.603 0 No days 5 days SUBJECT28.STOOL.603 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.603 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 5 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.603.mzXML 11712.SUBJECT28.STOOL.603 not applicable 5 13775 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.ORAL.611 2 Yes days 5 days SUBJECT29.ORAL.611 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.ORAL.611 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 5 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL 11712.SUBJECT29.ORAL.611.mzXML 11712.SUBJECT29.ORAL.611 not applicable 8 13812 oral Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT29.SKIN.616 2 Yes days 5 days SUBJECT29.SKIN.616 No Yes Yes 9 0.3 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 43 cm 2140 g 11.57 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2090 grams c-section SUBJECT29.SKIN.616 48.69158879 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 57.85046729 mL/kg/day 5 days neonate Homo sapiens 11712-29 9606 4 hours No No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 not applicable days 29 years 1 doses 1 doses 1 doses 1 doses No 0 doses Unknown 0 doses 0 doses latino 9.158878505 mL/kg/day 521 mL 0 mL 98 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2052 grams missing: not collected Yes Donor human milk No missing: not collected 4.112149533 -2.336448598 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk No 0 No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.623 0 No days 5 days SUBJECT3.ORAL.623 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.623 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 5 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.623.mzXML 11712.SUBJECT3.ORAL.623 not applicable 14 14403 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.631 0 No days 5 days SUBJECT3.SKIN.631 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.631 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 5 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.631.mzXML 11712.SUBJECT3.SKIN.631 not applicable 11 16865 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.1227 0 No days 5 days SUBJECT3.STOOL.1227 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.1227 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 5 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.STOOL.1227.mzXML 11712.SUBJECT3.STOOL.1227 not applicable 6 14192 fecal Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.641 2 Yes days 5 days SUBJECT30.ORAL.641 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:08:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.641 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 5 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.646.A.mzXML 11712.SUBJECT30.ORAL.646.A "Was a duplicate, verified which sample is which" 9 13927 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.658 2 Yes days 5 days SUBJECT30.SKIN.658 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:08:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.658 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 5 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.658.mzXML 11712.SUBJECT30.SKIN.658 not applicable 13 17231 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.675 2 Yes days 5 days SUBJECT30.STOOL.675 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.675 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 5 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.675.mzXML 11712.SUBJECT30.STOOL.675 not applicable 4 13653 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.690 2 Yes days 5 days SUBJECT31.ORAL.690 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.690 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 5 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.690.mzXML 11712.SUBJECT31.ORAL.690 not applicable 14 14380 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2129 2 Yes days 5 days SUBJECT31.SKIN.2129 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2129 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 5 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2129.mzXML 11712.SUBJECT31.SKIN.2129 not applicable 11 16905 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.702 2 Yes days 5 days SUBJECT31.STOOL.702 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.702 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 5 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.702.mzXML 11712.SUBJECT31.STOOL.702 not applicable 7 14116 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.731 0 No days 5 days SUBJECT34.ORAL.731 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.731 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 5 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.731.mzXML 11712.SUBJECT34.ORAL.731 not applicable 2 13551 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.739 0 No days 5 days SUBJECT34.SKIN.739 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.739 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 5 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.739.mzXML 11712.SUBJECT34.SKIN.739 not applicable 12 16979 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.748 0 No days 5 days SUBJECT34.STOOL.748 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.748 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 5 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.748.mzXML 11712.SUBJECT34.STOOL.748 not applicable 7 14085 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.756 0 No days 5 days SUBJECT35.ORAL.756 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.756 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 5 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.756.mzXML 11712.SUBJECT35.ORAL.756 not applicable 2 13499 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.761 0 No days 5 days SUBJECT35.SKIN.761 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.761 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 5 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.761.mzXML 11712.SUBJECT35.SKIN.761 not applicable 12 16947 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.767 0 No days 5 days SUBJECT35.STOOL.767 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.767 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 5 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.STOOL.767.mzXML 11712.SUBJECT35.STOOL.767 not applicable 7 14142 fecal Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.774 2 Yes days 5 days SUBJECT36.ORAL.774 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.774 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 5 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.774.mzXML 11712.SUBJECT36.ORAL.774 not applicable 2 13550 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.780 2 Yes days 5 days SUBJECT36.SKIN.780 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.780 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 5 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.780.mzXML 11712.SUBJECT36.SKIN.780 not applicable 12 17005 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.786 2 Yes days 5 days SUBJECT36.STOOL.786 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.786 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut No 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 5 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL not_used 11712.SUBJECT36.STOOL.786 "didn't inject, some signal" 7 14095 not_used Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.792 2 Yes days 5 days SUBJECT37.ORAL.792 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.792 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 5 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.792.mzXML 11712.SUBJECT37.ORAL.792 not applicable 2 13485 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.798 2 Yes days 5 days SUBJECT37.SKIN.798 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.798 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 5 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.798.mzXML 11712.SUBJECT37.SKIN.798 not applicable 12 16938 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.803 2 Yes days 5 days SUBJECT37.STOOL.803 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.803 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 5 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.803.mzXML 11712.SUBJECT37.STOOL.803 not applicable 4 13672 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.806 0 No days 5 days SUBJECT38.ORAL.806 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.806 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 5 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.806.mzXML 11712.SUBJECT38.ORAL.806 not applicable 2 13554 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.814 0 No days 5 days SUBJECT38.SKIN.814 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.814 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 5 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.814.mzXML 11712.SUBJECT38.SKIN.814 not applicable 12 17006 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.821 0 No days 5 days SUBJECT38.STOOL.821 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.821 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 5 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.821.mzXML 11712.SUBJECT38.STOOL.821 not applicable 5 13745 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.ORAL.831 0 No days 5 days SUBJECT39.ORAL.831 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.ORAL.831 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat oral human-oral Yes 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 5 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.ORAL.831.mzXML 11712.SUBJECT39.ORAL.831 not applicable 2 13518 oral Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 447426 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.SKIN.835 0 No days 5 days SUBJECT39.SKIN.835 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.SKIN.835 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat skin human-skin Yes 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 5 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.SKIN.835.mzXML 11712.SUBJECT39.SKIN.835 not applicable 12 16985 skin Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 539655 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT39.STOOL.839 0 No days 5 days SUBJECT39.STOOL.839 Yes Yes Yes 7 1.84 1 missing: not collected 2 days 35 weeks missing: not collected not applicable 46.5 cm 2740 g 12.67 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2650 grams c-section SUBJECT39.STOOL.839 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 5 days not applicable days 5 days 4 days 105 0 urban biome human-associated habitat stool human-gut Yes 24.23357664 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 5.62 20 Calories per ounce 19.45255474 mL/kg/day 5 days neonate Homo sapiens 11712-39 9606 26 hours Yes No 4 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses black 19.45255474 mL/kg/day 0 mL 332 mL 266.5 mL 11712.SUBJECT39.STOOL.839.mzXML 11712.SUBJECT39.STOOL.839 not applicable 5 13723 fecal Singleton 2585 grams missing: not collected Yes Formula Yes missing: not collected 5.656934307 -3.284671533 55.47201337 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected Yes 408170 0 days 3 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.842 0 No days 5 days SUBJECT4.ORAL.842 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.842 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 5 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.842.mzXML 11712.SUBJECT4.ORAL.842 not applicable 14 14375 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.853 0 No days 5 days SUBJECT4.SKIN.853 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.853 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 5 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.853.mzXML 11712.SUBJECT4.SKIN.853 not applicable 11 16922 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.864 0 No days 5 days SUBJECT4.STOOL.864 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.864 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 5 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.864.mzXML 11712.SUBJECT4.STOOL.864 not applicable 6 14204 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.884 5 Yes days 5 days SUBJECT40.ORAL.884 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 1:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.884 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.884.mzXML 11712.SUBJECT40.ORAL.884 not applicable 1 13441 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.905 5 Yes days 5 days SUBJECT40.SKIN.905 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 1:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.905 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.905.mzXML 11712.SUBJECT40.SKIN.905 not applicable 12 16983 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.924 5 Yes days 5 days SUBJECT40.STOOL.924 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 1899-12-30 00:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.924 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 5 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.924.mzXML 11712.SUBJECT40.STOOL.924 not applicable 4 13660 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.936 0 No days 5 days SUBJECT41.ORAL.936 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.936 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 5 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.936.mzXML 11712.SUBJECT41.ORAL.936 not applicable 2 13533 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.952 0 No days 5 days SUBJECT41.SKIN.952 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.952 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 5 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.952.mzXML 11712.SUBJECT41.SKIN.952 not applicable 10 16768 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.968 0 No days 5 days SUBJECT41.STOOL.968 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.968 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 5 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.968.mzXML 11712.SUBJECT41.STOOL.968 not applicable 5 13776 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.988 0 No days 5 days SUBJECT42.ORAL.988 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.988 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 5 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.988.mzXML 11712.SUBJECT42.ORAL.988 not applicable 2 13548 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1003 0 No days 5 days SUBJECT42.SKIN.1003 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1003 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 5 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1003.mzXML 11712.SUBJECT42.SKIN.1003 not applicable 10 16745 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1018 0 No days 5 days SUBJECT42.STOOL.1018 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1018 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 5 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1018.mzXML 11712.SUBJECT42.STOOL.1018 not applicable 5 13717 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1043 5 Yes days 5 days SUBJECT43.ORAL.1043 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1043 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 5 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1043.mzXML 11712.SUBJECT43.ORAL.1043 not applicable 1 13406 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1063 5 Yes days 5 days SUBJECT43.SKIN.1063 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1063 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 5 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1063.mzXML 11712.SUBJECT43.SKIN.1063 not applicable 10 16756 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT45.STOOL.1241 0 No days 5 days SUBJECT45.STOOL.1241 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 43 cm 1965 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2140 grams vaginal SUBJECT45.STOOL.1241 34.46019629 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 15 days missing: not collected 5 days 8 days 5 days 4 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 22 Calories per ounce 58.81497637 mL/kg/day 5 days neonate Homo sapiens 11712-45 9606 9 hours No No 5 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 31 years 0 doses 0 doses 0 doses 0 doses No 2 doses College 0 doses 0 doses Asian 24.35478008 mL/kg/day 474 mL 0 mL 335 mL 11712.SUBJECT45.STOOL.1241.mzXML 11712.SUBJECT45.STOOL.1241 not applicable 16 14257 fecal Singleton 1840 grams missing: not collected Yes Donor human milk No missing: not collected 6.361323155 8.905852417 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected no 408170 15 days 9 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT50.STOOL.1257 0 No days 5 days SUBJECT50.STOOL.1257 Yes Yes Yes 9 not applicable 2 missing: not collected 6 days 35 weeks missing: not collected not applicable 46.5 cm 2225 grams 10.29 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2120 grams vaginal SUBJECT50.STOOL.1257 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0.898876404 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 20 Calories per ounce 19.59550562 mL/kg/day 5 days neonate Homo sapiens 11712-50 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 19.59550562 mL/kg/day 0 mL 10 mL 218 mL 11712.SUBJECT50.STOOL.1257.mzXML 11712.SUBJECT50.STOOL.1257 not applicable 16 14253 fecal Twin 2100 grams missing: not collected No Formula No missing: not collected 5.617977528 -4.719101124 4.385964912 missing: not collected No RCHSD Yes No 11712 Formula No not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT52.STOOL.1262 0 No days 5 days SUBJECT52.STOOL.1262 No Yes Yes 9 0.1 2 missing: not collected 5 days 35 weeks missing: not collected not applicable 52 cm 3365 grams 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 3080 grams c-section SUBJECT52.STOOL.1262 27.51857355 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days not applicable days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.11 20 Calories per ounce 38.75185736 mL/kg/day 5 days neonate Homo sapiens 11712-52 9606 5 hours Yes No 2 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 5 days 31 years 0 doses 0 doses 1 doses 1 doses No 0 doses Graduate school 0 doses 0 doses "White, non-hispanic" 11.2332838 mL/kg/day 463 mL 0 mL 189 mL 11712.SUBJECT52.STOOL.1262.mzXML 11712.SUBJECT52.STOOL.1262 not applicable 16 14269 fecal Singleton 3060 grams missing: not collected No Donor human milk No missing: not collected 9.063893016 -8.469539376 0 missing: not collected No RCHSD Yes No 11712 Donor human milk No not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT53.STOOL.1264 2 Yes days 5 days SUBJECT53.STOOL.1264 No Yes Yes 8 0.2 2 missing: not collected 1 days 35 weeks missing: not collected not applicable 49.5 cm 2360 grams 9.63 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Not applicable 2310 grams vaginal SUBJECT53.STOOL.1264 53.4503632 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.26 22 Calories per ounce 81.23486683 mL/kg/day 5 days neonate Homo sapiens 11712-53 9606 7 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 29 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Hispanic 27.78450363 mL/kg/day 883 mL 0 mL 459 mL 11712.SUBJECT53.STOOL.1264.mzXML 11712.SUBJECT53.STOOL.1264 not applicable 16 14259 fecal Singleton 2245 grams missing: not collected No Donor human milk No missing: not collected 4.872881356 -2.118644068 0 missing: not collected No RCHSD Yes Yes 11712 Donor human milk Yes not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT54.STOOL.1267 0 No days 5 days SUBJECT54.STOOL.1267 Yes Yes No 9 0.56 2 missing: not collected 0 days 35 weeks missing: not collected not applicable 48 cm 2675 grams 11.61 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2460 grams c-section SUBJECT54.STOOL.1267 56.76902537 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 5 days 105 3 urban biome human-associated habitat stool human-gut missing: not collected 19.91989319 mL/kg/day Yes No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 63.55140187 mL/kg/day 5 days neonate Homo sapiens 11712-54 9606 5 hours No No 4 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 34 years 0 doses 0 doses 0 doses 0 doses No 1 doses High School 0 doses 0 doses Hispanic 6.782376502 mL/kg/day 1063 mL 373 mL 127 mL 11712.SUBJECT54.STOOL.1267.mzXML 11712.SUBJECT54.STOOL.1267 not applicable 16 14283 fecal Singleton 2425 grams missing: not collected Yes Donor human milk No missing: not collected 9.345794393 -8.037383178 23.8643634 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes 0 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT6.ORAL.1091 0 No days 5 days SUBJECT6.ORAL.1091 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.ORAL.1091 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 5 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.ORAL.1091.mzXML 11712.SUBJECT6.ORAL.1091 not applicable 1 13363 oral Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.SKIN.1096 0 No days 5 days SUBJECT6.SKIN.1096 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.SKIN.1096 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 5 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.SKIN.1096.mzXML 11712.SUBJECT6.SKIN.1096 not applicable 12 17000 skin Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT6.STOOL.1101 0 No days 5 days SUBJECT6.STOOL.1101 Yes Yes Yes 9 0.16 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 44 cm 2175 g 11.23 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2135 grams c-section SUBJECT6.STOOL.1101 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 70.91954023 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.16 20 Calories per ounce 13.90804598 mL/kg/day 5 days neonate Homo sapiens 11712-6 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 13.90804598 mL/kg/day 0 mL 617 mL 121 mL 11712.SUBJECT6.STOOL.1101.mzXML 11712.SUBJECT6.STOOL.1101 not applicable 4 13638 fecal Twin 2085 grams missing: not collected No Formula No missing: not collected 4.137931034 -1.83908046 83.60433604 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.ORAL.1106 0 No days 5 days SUBJECT7.ORAL.1106 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.ORAL.1106 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat oral human-oral Yes 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 5 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.ORAL.1106.mzXML 11712.SUBJECT7.ORAL.1106 not applicable 2 13486 oral Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.SKIN.1110 0 No days 5 days SUBJECT7.SKIN.1110 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.SKIN.1110 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat skin human-skin Yes 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 5 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.SKIN.1110.mzXML 11712.SUBJECT7.SKIN.1110 not applicable 12 17017 skin Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT7.STOOL.1115 0 No days 5 days SUBJECT7.STOOL.1115 Yes Yes Yes 9 0.57 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 50 cm 3370 g 13.48 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 3165 grams c-section SUBJECT7.STOOL.1115 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days not applicable days 4 days 292 1 urban biome human-associated habitat stool human-gut Yes 48.66468843 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.18 20 Calories per ounce 9.681008902 mL/kg/day 5 days neonate Homo sapiens 11712-7 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 5 days 25 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 9.681008902 mL/kg/day 0 mL 656 mL 130.5 mL 11712.SUBJECT7.STOOL.1115.mzXML 11712.SUBJECT7.STOOL.1115 not applicable 5 13748 fecal Twin 3150 grams missing: not collected No Formula No missing: not collected 6.528189911 -6.083086053 83.40750159 missing: not collected No UCSDMI No No 11712 Formula No not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1130 2 Yes days 5 days SUBJECT8.ORAL.1130 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1130 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 5 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1130.mzXML 11712.SUBJECT8.ORAL.1130 not applicable 1 13368 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1147 2 Yes days 5 days SUBJECT8.SKIN.1147 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1147 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 5 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1147.mzXML 11712.SUBJECT8.SKIN.1147 not applicable 15 17053 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1163 2 Yes days 5 days SUBJECT8.STOOL.1163 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1163 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 5 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1163.mzXML 11712.SUBJECT8.STOOL.1163 not applicable 5 13762 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1170 2 Yes days 5 days SUBJECT9.ORAL.1170 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1170 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 5 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1170.mzXML 11712.SUBJECT9.ORAL.1170 not applicable 8 13872 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1189 2 Yes days 5 days SUBJECT9.SKIN.1189 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1189 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 5 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1189.mzXML 11712.SUBJECT9.SKIN.1189 not applicable 11 16876 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1209 2 Yes days 5 days SUBJECT9.STOOL.1209 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1209 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 5 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1209.mzXML 11712.SUBJECT9.STOOL.1209 not applicable 3 14042 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.5 0 No days 6 days SUBJECT1.ORAL.5 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.5 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 6 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL not_used 11712.SUBJECT1.ORAL.5 no TIC 14 14388 not_used Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.15 0 No days 6 days SUBJECT1.SKIN.15 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.15 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 6 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.15.mzXML 11712.SUBJECT1.SKIN.15 not applicable 11 16908 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.24 0 No days 6 days SUBJECT1.STOOL.24 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.24 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 6 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.24.mzXML 11712.SUBJECT1.STOOL.24 not applicable 6 14241 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.35 0 No days 6 days SUBJECT10.ORAL.35 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.35 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 6 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.35.mzXML 11712.SUBJECT10.ORAL.35 not applicable 14 14393 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.43 0 No days 6 days SUBJECT10.SKIN.43 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.43 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 6 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL not_used 11712.SUBJECT10.SKIN.43 didn't inject 11 16916 not_used Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.50 0 No days 6 days SUBJECT10.STOOL.50 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.50 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 6 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.50.mzXML 11712.SUBJECT10.STOOL.50 not applicable 6 14193 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.68 0 No days 6 days SUBJECT12.ORAL.68 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.68 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 6 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.68.mzXML 11712.SUBJECT12.ORAL.68 not applicable 2 13564 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.83 0 No days 6 days SUBJECT12.SKIN.83 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.83 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 6 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.83.mzXML 11712.SUBJECT12.SKIN.83 not applicable 12 16937 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.98 0 No days 6 days SUBJECT12.STOOL.98 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.98 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 6 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.98.mzXML 11712.SUBJECT12.STOOL.98 not applicable 5 13738 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.121 0 No days 6 days SUBJECT14.ORAL.121 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.121 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 6 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.121.mzXML 11712.SUBJECT14.ORAL.121 not applicable 2 13492 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.131 0 No days 6 days SUBJECT14.SKIN.131 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.131 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 6 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.131.mzXML 11712.SUBJECT14.SKIN.131 not applicable 10 16795 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.140 0 No days 6 days SUBJECT14.STOOL.140 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.140 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 6 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.140.mzXML 11712.SUBJECT14.STOOL.140 not applicable 3 14064 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.158 0 No days 6 days SUBJECT16.ORAL.158 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.158 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 6 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.158.mzXML 11712.SUBJECT16.ORAL.158 not applicable 8 13786 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.175 0 No days 6 days SUBJECT16.SKIN.175 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.175 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 6 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.175.mzXML 11712.SUBJECT16.SKIN.175 not applicable 10 16760 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.192 0 No days 6 days SUBJECT16.STOOL.192 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.192 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 7 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.192.mzXML 11712.SUBJECT16.STOOL.192 not applicable 6 14225 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.207 7 Yes days 6 days SUBJECT17.ORAL.207 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.207 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 6 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.207.A.mzXML 11712.SUBJECT17.ORAL.207.A "Was a duplicate, verified which sample is which" 1 13448 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.229 7 Yes days 6 days SUBJECT17.SKIN.229 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.229 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 6 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.229.mzXML 11712.SUBJECT17.SKIN.229 not applicable 10 16817 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.251 7 Yes days 6 days SUBJECT17.STOOL.251 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.251 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 6 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.251.mzXML 11712.SUBJECT17.STOOL.251 not applicable 6 14179 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.274 2 Yes days 6 days SUBJECT18.ORAL.274 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.274 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 6 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.274.mzXML 11712.SUBJECT18.ORAL.274 not applicable 1 13371 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.296 2 Yes days 6 days SUBJECT18.SKIN.296 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.296 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 6 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.296.mzXML 11712.SUBJECT18.SKIN.296 not applicable 10 16728 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.318 2 Yes days 6 days SUBJECT18.STOOL.318 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.318 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 6 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.318.mzXML 11712.SUBJECT18.STOOL.318 not applicable 6 14190 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.339 0 No days 6 days SUBJECT19.ORAL.339 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.339 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.339.mzXML 11712.SUBJECT19.ORAL.339 not applicable 8 13820 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.354 0 No days 6 days SUBJECT19.SKIN.354 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.354 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin Yes 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.354.mzXML 11712.SUBJECT19.SKIN.354 not applicable 15 17125 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.369 0 No days 6 days SUBJECT19.STOOL.369 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.369 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.369.mzXML 11712.SUBJECT19.STOOL.369 not applicable 4 13583 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.396 0 No days 6 days SUBJECT20.ORAL.396 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.396 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral Yes 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.ORAL.396 didn't inject 8 13862 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.410 0 No days 6 days SUBJECT20.SKIN.410 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.410 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin Yes 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.410.mzXML 11712.SUBJECT20.SKIN.410 not applicable 13 17204 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.425 0 No days 6 days SUBJECT20.STOOL.425 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.425 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.425.mzXML 11712.SUBJECT20.STOOL.425 not applicable 4 13586 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.441 7 Yes days 6 days SUBJECT21.ORAL.441 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.441 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 6 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.441.mzXML 11712.SUBJECT21.ORAL.441 not applicable 8 13873 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.451 7 Yes days 6 days SUBJECT21.SKIN.451 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.451 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 6 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.451.mzXML 11712.SUBJECT21.SKIN.451 not applicable 15 17129 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.461 7 Yes days 6 days SUBJECT21.STOOL.461 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.461 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 6 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL not_used 11712.SUBJECT21.STOOL.461 didn't inject 4 13606 not_used Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.485 0 No days 6 days SUBJECT23.ORAL.485 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.485 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 6 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.485.mzXML 11712.SUBJECT23.ORAL.485 not applicable 8 13850 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.494 0 No days 6 days SUBJECT23.SKIN.494 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.494 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 6 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.503 0 No days 6 days SUBJECT23.STOOL.503 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.503 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 6 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.503.mzXML 11712.SUBJECT23.STOOL.503 not applicable 3 14072 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.512 0 No days 6 days SUBJECT24.ORAL.512 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.512 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 6 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not_used 11712.SUBJECT24.ORAL.512 didn't inject 8 13840 not_used Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.519 0 No days 6 days SUBJECT24.SKIN.519 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.519 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 6 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.526 0 No days 6 days SUBJECT24.STOOL.526 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.526 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 6 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.526.mzXML 11712.SUBJECT24.STOOL.526 not applicable 3 13990 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.533 0 No days 6 days SUBJECT25.ORAL.533 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.533 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 6 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.533.mzXML 11712.SUBJECT25.ORAL.533 not applicable 9 13944 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.542 0 No days 6 days SUBJECT25.SKIN.542 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.542 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 6 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.SKIN.542.mzXML 11712.SUBJECT25.SKIN.542 not applicable 13 17186 skin Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.551 0 No days 6 days SUBJECT25.STOOL.551 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.551 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 6 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.551.mzXML 11712.SUBJECT25.STOOL.551 not applicable 4 13657 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.ORAL.560 3 Yes days 6 days SUBJECT26.ORAL.560 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.ORAL.560 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 6 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.ORAL.560.mzXML 11712.SUBJECT26.ORAL.560 not applicable 9 13942 oral Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.SKIN.566 3 Yes days 6 days SUBJECT26.SKIN.566 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.SKIN.566 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 6 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.SKIN.566.mzXML 11712.SUBJECT26.SKIN.566 not applicable 13 17222 skin Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT26.STOOL.572 3 Yes days 6 days SUBJECT26.STOOL.572 Yes Yes Yes 9 0.2 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 45.5 cm 2450 g 11.83 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2400 grams vaginal SUBJECT26.STOOL.572 63.60544218 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 4 days not applicable days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 15.57823129 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 20 Calories per ounce 71.42857143 mL/kg/day 6 days neonate Homo sapiens 11712-26 9606 4 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 42 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses latino 7.823129252 mL/kg/day 935 mL 229 mL 115 mL 11712.SUBJECT26.STOOL.572.mzXML 11712.SUBJECT26.STOOL.572 not applicable 4 13641 fecal Singleton 2365 grams missing: not collected No Donor human milk Yes missing: not collected 3.469387755 -2.040816327 17.90461298 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 5 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.589 0 No days 6 days SUBJECT28.ORAL.589 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.589 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 6 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL not_used 11712.SUBJECT28.ORAL.589 didn't inject 1 13383 not_used Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.597 0 No days 6 days SUBJECT28.SKIN.597 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.597 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 6 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.597.mzXML 11712.SUBJECT28.SKIN.597 not applicable 10 16762 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.604 0 No days 6 days SUBJECT28.STOOL.604 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.604 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 6 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.604.mzXML 11712.SUBJECT28.STOOL.604 not applicable 5 13716 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.624 0 No days 6 days SUBJECT3.ORAL.624 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.624 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 6 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.624.mzXML 11712.SUBJECT3.ORAL.624 not applicable 14 14356 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.632 0 No days 6 days SUBJECT3.SKIN.632 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.632 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 6 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.632.mzXML 11712.SUBJECT3.SKIN.632 not applicable 11 16879 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.637 0 No days 6 days SUBJECT3.STOOL.637 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.637 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 6 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.STOOL.637.mzXML 11712.SUBJECT3.STOOL.637 not applicable 7 14117 fecal Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.646 2 Yes days 6 days SUBJECT30.ORAL.646 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.646 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 6 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.646.B.mzXML 11712.SUBJECT30.ORAL.646.B "Was a duplicate, verified which sample is which" 9 13916 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.663 2 Yes days 6 days SUBJECT30.SKIN.663 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.663 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 6 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.663.mzXML 11712.SUBJECT30.SKIN.663 not applicable 13 17195 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.680 2 Yes days 6 days SUBJECT30.STOOL.680 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.680 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 6 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.680.mzXML 11712.SUBJECT30.STOOL.680 not applicable 4 13596 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.691 2 Yes days 6 days SUBJECT31.ORAL.691 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.691 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 6 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.691.mzXML 11712.SUBJECT31.ORAL.691 not applicable 14 14406 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.703 2 Yes days 6 days SUBJECT31.STOOL.703 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.703 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 6 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.703.mzXML 11712.SUBJECT31.STOOL.703 not applicable 7 14132 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.732 0 No days 6 days SUBJECT34.ORAL.732 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.732 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 6 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.732.mzXML 11712.SUBJECT34.ORAL.732 not applicable 2 13474 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.740 0 No days 6 days SUBJECT34.SKIN.740 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.740 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 6 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.740.mzXML 11712.SUBJECT34.SKIN.740 not applicable 12 16967 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.749 0 No days 6 days SUBJECT34.STOOL.749 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.749 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 6 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.749.mzXML 11712.SUBJECT34.STOOL.749 not applicable 7 14127 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.757 0 No days 6 days SUBJECT35.ORAL.757 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.757 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 6 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL not_used 11712.SUBJECT35.ORAL.757 didn't inject 1 13401 not_used Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.762 0 No days 6 days SUBJECT35.SKIN.762 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.762 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 6 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.762.mzXML 11712.SUBJECT35.SKIN.762 not applicable 12 16930 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.768 0 No days 6 days SUBJECT35.STOOL.768 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.768 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 6 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL not_used 11712.SUBJECT35.STOOL.768 didn't inject 7 14094 not_used Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.ORAL.775 2 Yes days 6 days SUBJECT36.ORAL.775 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.ORAL.775 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat oral human-oral Yes 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 6 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.ORAL.775.mzXML 11712.SUBJECT36.ORAL.775 not applicable 1 13439 oral Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.SKIN.781 2 Yes days 6 days SUBJECT36.SKIN.781 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.SKIN.781 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat skin human-skin Yes 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 6 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.SKIN.781.mzXML 11712.SUBJECT36.SKIN.781 not applicable 12 16943 skin Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT36.STOOL.787 2 Yes days 6 days SUBJECT36.STOOL.787 Yes Yes Yes 8 0.31 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 44.5 cm 2450 g 12.37 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2312 grams c-section SUBJECT36.STOOL.787 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days not applicable days not applicable days 5 days 292 0 urban biome human-associated habitat stool human-gut Yes 21.2244898 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 35.27210884 mL/kg/day 6 days neonate Homo sapiens 11712-36 9606 10 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 6 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses Pacific Islander 35.27210884 mL/kg/day 0 mL 312 mL 518.5 mL 11712.SUBJECT36.STOOL.787.mzXML 11712.SUBJECT36.STOOL.787 not applicable 4 13621 fecal Singleton 2276 grams missing: not collected No Formula No missing: not collected 7.102040816 -5.632653061 37.56773028 missing: not collected No UCSDMI No No 11712 Formula No not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.793 2 Yes days 6 days SUBJECT37.ORAL.793 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.793 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 6 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.793.mzXML 11712.SUBJECT37.ORAL.793 not applicable 2 13516 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.799 2 Yes days 6 days SUBJECT37.SKIN.799 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.799 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 6 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.799.mzXML 11712.SUBJECT37.SKIN.799 not applicable 12 16936 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.804 2 Yes days 6 days SUBJECT37.STOOL.804 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.804 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 6 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.804.mzXML 11712.SUBJECT37.STOOL.804 not applicable 4 13623 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.807 0 No days 6 days SUBJECT38.ORAL.807 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.807 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 6 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.807.mzXML 11712.SUBJECT38.ORAL.807 not applicable 2 13542 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.815 0 No days 6 days SUBJECT38.SKIN.815 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.815 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 6 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.815.mzXML 11712.SUBJECT38.SKIN.815 not applicable 12 16958 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.822 0 No days 6 days SUBJECT38.STOOL.822 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.822 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 6 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.822.mzXML 11712.SUBJECT38.STOOL.822 not applicable 5 13735 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.843 0 No days 6 days SUBJECT4.ORAL.843 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.843 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 6 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.843.mzXML 11712.SUBJECT4.ORAL.843 not applicable 14 14399 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.854 0 No days 6 days SUBJECT4.SKIN.854 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.854 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 6 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.854.mzXML 11712.SUBJECT4.SKIN.854 not applicable 11 16898 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.865 0 No days 6 days SUBJECT4.STOOL.865 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.865 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 6 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.865.mzXML 11712.SUBJECT4.STOOL.865 not applicable 6 14181 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.885 5 Yes days 6 days SUBJECT40.ORAL.885 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.885 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.885.mzXML 11712.SUBJECT40.ORAL.885 not applicable 8 13841 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.906 5 Yes days 6 days SUBJECT40.SKIN.906 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.906 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.906.mzXML 11712.SUBJECT40.SKIN.906 not applicable 12 16946 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.925 5 Yes days 6 days SUBJECT40.STOOL.925 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.925 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 6 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.925.mzXML 11712.SUBJECT40.STOOL.925 not applicable 5 13697 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.937 0 No days 6 days SUBJECT41.ORAL.937 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.937 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 6 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL not_used 11712.SUBJECT41.ORAL.937 no signal 2 13547 not_used Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.953 0 No days 6 days SUBJECT41.SKIN.953 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.953 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 6 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.953.mzXML 11712.SUBJECT41.SKIN.953 not applicable 10 16780 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.969 0 No days 6 days SUBJECT41.STOOL.969 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.969 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 6 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.969.mzXML 11712.SUBJECT41.STOOL.969 not applicable 5 13693 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.1226 0 No days 6 days SUBJECT42.ORAL.1226 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.1226 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral missing: not collected 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 6 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.1226.mzXML 11712.SUBJECT42.ORAL.1226 not applicable 2 13512 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1004 0 No days 6 days SUBJECT42.SKIN.1004 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1004 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 6 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1004.mzXML 11712.SUBJECT42.SKIN.1004 not applicable 10 16757 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1019 0 No days 6 days SUBJECT42.STOOL.1019 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1019 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 6 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1019.mzXML 11712.SUBJECT42.STOOL.1019 not applicable 5 13705 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1024 5 Yes days 6 days SUBJECT43.ORAL.1024 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1024 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 6 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1024.mzXML 11712.SUBJECT43.ORAL.1024 not applicable 9 13911 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1044 5 Yes days 6 days SUBJECT43.SKIN.1044 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1044 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 6 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1044.mzXML 11712.SUBJECT43.SKIN.1044 not applicable 13 17154 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1064 5 Yes days 6 days SUBJECT43.STOOL.1064 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1064 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 6 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1064.mzXML 11712.SUBJECT43.STOOL.1064 not applicable 3 13986 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT46.STOOL.1245 0 No days 6 days SUBJECT46.STOOL.1245 No Yes Yes 9 0.33 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 48.5 cm 2805 grams 11.93 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2610 grams c-section SUBJECT46.STOOL.1245 25.36287242 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 4 days not applicable days 4 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 72.72727273 mL/kg/day 6 days neonate Homo sapiens 11712-46 9606 1 hours Yes No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 43 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 47.36440031 mL/kg/day 498 mL 0 mL 930 mL 11712.SUBJECT46.STOOL.1245.mzXML 11712.SUBJECT46.STOOL.1245 not applicable 16 14272 fecal Singleton 2540 grams missing: not collected No Donor human milk No missing: not collected 9.44741533 -6.951871658 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT47.STOOL.1248 0 No days 6 days SUBJECT47.STOOL.1248 No Yes Yes 8 0.34 2 missing: not collected 2 days 35 weeks missing: not collected not applicable 51 cm 2735 grams 10.51 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes Not applicable 2640 grams vaginal SUBJECT47.STOOL.1248 36.5630713 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 3 days not applicable days 3 days 5 days 105 2 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day No No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.36 20 Calories per ounce 72.34264821 mL/kg/day 6 days neonate Homo sapiens 11712-47 9606 2 hours No No 0 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 7 days 31 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses Graduate school 1 doses 0 doses "White, non-hispanic" 35.77957691 mL/kg/day 700 mL 0 mL 685 mL 11712.SUBJECT47.STOOL.1248.mzXML 11712.SUBJECT47.STOOL.1248 not applicable 16 14281 fecal Singleton 2580 grams missing: not collected No Donor human milk No missing: not collected 5.667276051 -3.473491773 0 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT55.STOOL.1270 2 Yes days 6 days SUBJECT55.STOOL.1270 Yes Yes Yes 7 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 45 cm 2275 grams 11.23 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:36:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2605 grams vaginal SUBJECT55.STOOL.1270 53.06122449 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 10 days 4 days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 95.94976452 mL/kg/day 6 days neonate Homo sapiens 11712-55 9606 8 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 42.88854003 mL/kg/day 845 mL 0 mL 683 mL 11712.SUBJECT55.STOOL.1270.mzXML 11712.SUBJECT55.STOOL.1270 not applicable 16 14282 fecal Twin 2100 grams missing: not collected Yes Donor human milk Yes missing: not collected 7.692307692 14.50549451 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 6 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 6 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT56.STOOL.1273 0 No days 6 days SUBJECT56.STOOL.1273 Yes Yes Yes 9 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 44 cm 2290 grams 11.83 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:32:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2580 grams vaginal SUBJECT56.STOOL.1273 62.75733001 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 13 days 4 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 103.7429819 mL/kg/day 6 days neonate Homo sapiens 11712-56 9606 3 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 40.9856519 mL/kg/day 1006 mL 0 mL 657 mL 11712.SUBJECT56.STOOL.1273.mzXML 11712.SUBJECT56.STOOL.1273 not applicable 16 14306 fecal Twin 2090 grams missing: not collected Yes Donor human milk Yes missing: not collected 8.733624454 12.66375546 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 1 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 15 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT8.ORAL.1131 2 Yes days 6 days SUBJECT8.ORAL.1131 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1131 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 6 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1131.mzXML 11712.SUBJECT8.ORAL.1131 not applicable 1 13452 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1148 2 Yes days 6 days SUBJECT8.SKIN.1148 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1148 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 6 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1148.mzXML 11712.SUBJECT8.SKIN.1148 not applicable 15 17118 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1164 2 Yes days 6 days SUBJECT8.STOOL.1164 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1164 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 6 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1164.mzXML 11712.SUBJECT8.STOOL.1164 not applicable 7 14096 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1171 2 Yes days 6 days SUBJECT9.ORAL.1171 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1171 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 6 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL not_used 11712.SUBJECT9.ORAL.1171 didn't inject 8 13819 not_used Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1190 2 Yes days 6 days SUBJECT9.SKIN.1190 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1190 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 6 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1190.mzXML 11712.SUBJECT9.SKIN.1190 not applicable 15 17119 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1210 2 Yes days 6 days SUBJECT9.STOOL.1210 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1210 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 6 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1210.mzXML 11712.SUBJECT9.STOOL.1210 not applicable 3 14030 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.6 0 No days 7 days SUBJECT1.ORAL.6 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.6 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral Yes 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 7 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.6.mzXML 11712.SUBJECT1.ORAL.6 not applicable 14 14365 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.16 0 No days 7 days SUBJECT1.SKIN.16 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.16 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin Yes 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 7 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.16.mzXML 11712.SUBJECT1.SKIN.16 not applicable 11 16920 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.25 0 No days 7 days SUBJECT1.STOOL.25 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.25 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut Yes 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 7 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL not_used 11712.SUBJECT1.STOOL.25 didn't inject 6 14230 not_used Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.36 0 No days 7 days SUBJECT10.ORAL.36 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.36 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral Yes 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 7 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.36.mzXML 11712.SUBJECT10.ORAL.36 not applicable 14 14394 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.44 0 No days 7 days SUBJECT10.SKIN.44 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.44 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin Yes 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 7 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.44.mzXML 11712.SUBJECT10.SKIN.44 not applicable 11 16878 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.51 0 No days 7 days SUBJECT10.STOOL.51 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.51 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut Yes 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 7 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.51.mzXML 11712.SUBJECT10.STOOL.51 not applicable 6 14217 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.69 0 No days 7 days SUBJECT12.ORAL.69 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.69 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 7 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.69.mzXML 11712.SUBJECT12.ORAL.69 not applicable 1 13387 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.84 0 No days 7 days SUBJECT12.SKIN.84 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.84 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 7 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.84.mzXML 11712.SUBJECT12.SKIN.84 not applicable 12 16998 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.99 0 No days 7 days SUBJECT12.STOOL.99 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.99 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 7 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.99.mzXML 11712.SUBJECT12.STOOL.99 not applicable 5 13696 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.122 0 No days 7 days SUBJECT14.ORAL.122 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.122 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 7 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.122.mzXML 11712.SUBJECT14.ORAL.122 not applicable 2 13544 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.132 0 No days 7 days SUBJECT14.SKIN.132 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.132 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 7 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.132.mzXML 11712.SUBJECT14.SKIN.132 not applicable 10 16792 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.141 0 No days 7 days SUBJECT14.STOOL.141 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.141 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 7 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.141.mzXML 11712.SUBJECT14.STOOL.141 not applicable 5 13754 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.159 0 No days 7 days SUBJECT16.ORAL.159 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.159 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 7 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.159.mzXML 11712.SUBJECT16.ORAL.159 not applicable 2 13494 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.176 0 No days 7 days SUBJECT16.SKIN.176 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.176 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 7 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.176.mzXML 11712.SUBJECT16.SKIN.176 not applicable 10 16790 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.193 0 No days 7 days SUBJECT16.STOOL.193 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.193 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 8 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.193.mzXML 11712.SUBJECT16.STOOL.193 not applicable 5 13777 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.216 7 Yes days 7 days SUBJECT17.ORAL.216 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.216 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 7 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.216.mzXML 11712.SUBJECT17.ORAL.216 not applicable 2 13504 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.238 7 Yes days 7 days SUBJECT17.SKIN.238 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.238 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 7 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.238.mzXML 11712.SUBJECT17.SKIN.238 not applicable 10 16767 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.260 7 Yes days 7 days SUBJECT17.STOOL.260 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:51:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.260 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 7 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.260.mzXML 11712.SUBJECT17.STOOL.260 not applicable 5 13692 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.275 2 Yes days 7 days SUBJECT18.ORAL.275 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.275 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 7 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.275.mzXML 11712.SUBJECT18.ORAL.275 not applicable 9 13934 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.297 2 Yes days 7 days SUBJECT18.SKIN.297 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.297 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 7 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.297.mzXML 11712.SUBJECT18.SKIN.297 not applicable 15 17090 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.319 2 Yes days 7 days SUBJECT18.STOOL.319 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.319 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 7 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.319.mzXML 11712.SUBJECT18.STOOL.319 not applicable 3 14032 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.340 0 No days 7 days SUBJECT19.ORAL.340 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.340 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral Yes 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.340.mzXML 11712.SUBJECT19.ORAL.340 not applicable 9 13941 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.1234.A 0 No days 7 days SUBJECT19.SKIN.1234.A Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.1234.A 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.1234.A.mzXML 11712.SUBJECT19.SKIN.1234.A true duplicate 13 17234 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.1234.B 0 No days 7 days SUBJECT19.SKIN.1234.B Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.1234.B 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.1234.B.mzXML 11712.SUBJECT19.SKIN.1234.B true duplicate 13 17221 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.370 0 No days 7 days SUBJECT19.STOOL.370 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.370 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut Yes 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.370.mzXML 11712.SUBJECT19.STOOL.370 not applicable 4 13605 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.426 0 No days 7 days SUBJECT20.STOOL.426 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.426 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut Yes 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not applicable not applicable not applicable not applicable not applicable not applicable Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.442 7 Yes days 7 days SUBJECT21.ORAL.442 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.442 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 7 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.442.B.mzXML 11712.SUBJECT21.ORAL.442.B "Was a duplicate, verified which sample is which" 9 13957 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.452 7 Yes days 7 days SUBJECT21.SKIN.452 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.452 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 7 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.452.mzXML 11712.SUBJECT21.SKIN.452 not applicable 15 17098 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.462 7 Yes days 7 days SUBJECT21.STOOL.462 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.462 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 7 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.462.mzXML 11712.SUBJECT21.STOOL.462 not applicable 3 14052 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.486 0 No days 7 days SUBJECT23.ORAL.486 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.486 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral Yes 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 7 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.486.mzXML 11712.SUBJECT23.ORAL.486 not applicable 9 13952 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.495 0 No days 7 days SUBJECT23.SKIN.495 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.495 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin Yes 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 7 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.SKIN.495.mzXML 11712.SUBJECT23.SKIN.495 not applicable 13 17153 skin Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.504 0 No days 7 days SUBJECT23.STOOL.504 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.504 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut Yes 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 7 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.504.mzXML 11712.SUBJECT23.STOOL.504 not applicable 4 13630 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.ORAL.513 0 No days 7 days SUBJECT24.ORAL.513 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.ORAL.513 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 7 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.ORAL.513.mzXML 11712.SUBJECT24.ORAL.513 not applicable 9 13964 oral Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.SKIN.520 0 No days 7 days SUBJECT24.SKIN.520 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.SKIN.520 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 7 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT24.STOOL.527 0 No days 7 days SUBJECT24.STOOL.527 No Yes Yes 9 0.17 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 48 cm 2655 g 11.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes not applicable 2560 grams vaginal SUBJECT24.STOOL.527 52.7306968 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.17 20 Calories per ounce 94.2157654 mL/kg/day 7 days neonate Homo sapiens 11712-24 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 41.4850686 mL/kg/day 980 mL 0 mL 771 mL 11712.SUBJECT24.STOOL.527.mzXML 11712.SUBJECT24.STOOL.527 not applicable 3 14050 fecal Singleton 2486 grams missing: not collected No Donor human milk No missing: not collected 6.365348399 -3.578154426 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.534 0 No days 7 days SUBJECT25.ORAL.534 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.534 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral Yes 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 7 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.534.mzXML 11712.SUBJECT25.ORAL.534 not applicable 9 13915 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.543 0 No days 7 days SUBJECT25.SKIN.543 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.543 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin Yes 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 7 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.SKIN.543.mzXML 11712.SUBJECT25.SKIN.543 not applicable 13 17173 skin Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.552 0 No days 7 days SUBJECT25.STOOL.552 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.552 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut Yes 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 7 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.552.mzXML 11712.SUBJECT25.STOOL.552 not applicable 4 13633 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.590 0 No days 7 days SUBJECT28.ORAL.590 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.590 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral Yes 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 7 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.ORAL.590.mzXML 11712.SUBJECT28.ORAL.590 not applicable 2 13532 oral Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.598 0 No days 7 days SUBJECT28.SKIN.598 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.598 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin Yes 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 7 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.598.mzXML 11712.SUBJECT28.SKIN.598 not applicable 10 16753 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.605 0 No days 7 days SUBJECT28.STOOL.605 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.605 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut Yes 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 7 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.605.mzXML 11712.SUBJECT28.STOOL.605 not applicable 5 13715 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.625 0 No days 7 days SUBJECT3.ORAL.625 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.625 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 7 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.625.mzXML 11712.SUBJECT3.ORAL.625 not applicable 14 14328 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.633 0 No days 7 days SUBJECT3.SKIN.633 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.633 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 7 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.633.mzXML 11712.SUBJECT3.SKIN.633 not applicable 11 16921 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.638 0 No days 7 days SUBJECT3.STOOL.638 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.638 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 7 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.STOOL.638.mzXML 11712.SUBJECT3.STOOL.638 not applicable 6 14207 fecal Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.647 2 Yes days 7 days SUBJECT30.ORAL.647 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.647 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 7 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.647.mzXML 11712.SUBJECT30.ORAL.647 not applicable 14 14386 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.664 2 Yes days 7 days SUBJECT30.SKIN.664 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.664 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 7 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.664.mzXML 11712.SUBJECT30.SKIN.664 not applicable 11 16884 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.681 2 Yes days 7 days SUBJECT30.STOOL.681 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.681 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 7 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.681.mzXML 11712.SUBJECT30.STOOL.681 not applicable 6 14218 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.692 2 Yes days 7 days SUBJECT31.ORAL.692 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.692 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 7 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.692.mzXML 11712.SUBJECT31.ORAL.692 not applicable 14 14355 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2127 2 Yes days 7 days SUBJECT31.SKIN.2127 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2127 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 7 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2127.mzXML 11712.SUBJECT31.SKIN.2127 not applicable 11 16883 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.704 2 Yes days 7 days SUBJECT31.STOOL.704 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.704 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 7 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.704.mzXML 11712.SUBJECT31.STOOL.704 not applicable 7 14090 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.733 0 No days 7 days SUBJECT34.ORAL.733 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.733 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral Yes 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 7 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.733.mzXML 11712.SUBJECT34.ORAL.733 not applicable 1 13414 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.741 0 No days 7 days SUBJECT34.SKIN.741 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.741 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin Yes 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 7 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.741.mzXML 11712.SUBJECT34.SKIN.741 not applicable 12 16945 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.750 0 No days 7 days SUBJECT34.STOOL.750 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.750 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut Yes 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 7 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.750.mzXML 11712.SUBJECT34.STOOL.750 not applicable 7 14119 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.ORAL.758 0 No days 7 days SUBJECT35.ORAL.758 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.ORAL.758 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 7 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.ORAL.758.mzXML 11712.SUBJECT35.ORAL.758 not applicable 1 13365 oral Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.SKIN.763 0 No days 7 days SUBJECT35.SKIN.763 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.SKIN.763 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 7 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.SKIN.763.mzXML 11712.SUBJECT35.SKIN.763 not applicable 12 16997 skin Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT35.STOOL.769 0 No days 7 days SUBJECT35.STOOL.769 Yes Yes Yes 8 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 48 cm 2145 g 9.31 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2155 grams c-section SUBJECT35.STOOL.769 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 6 days 4 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 55.47785548 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 28.77122877 mL/kg/day 7 days neonate Homo sapiens 11712-35 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 7 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 28.77122877 mL/kg/day 0 mL 833 mL 432 mL 11712.SUBJECT35.STOOL.769.mzXML 11712.SUBJECT35.STOOL.769 not applicable 7 14109 fecal Twin 2045 grams missing: not collected No Formula No missing: not collected 4.662004662 0.466200466 65.84980237 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.1231 2 Yes days 7 days SUBJECT37.ORAL.1231 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.1231 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 7 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.1231.mzXML 11712.SUBJECT37.ORAL.1231 not applicable 14 14315 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.1261 2 Yes days 7 days SUBJECT37.SKIN.1261 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.1261 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 7 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.1261.mzXML 11712.SUBJECT37.SKIN.1261 not applicable 13 17188 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.1232 2 Yes days 7 days SUBJECT37.STOOL.1232 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.1232 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 7 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.1232.mzXML 11712.SUBJECT37.STOOL.1232 not applicable 16 14309 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.808 0 No days 7 days SUBJECT38.ORAL.808 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.808 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 7 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.808.mzXML 11712.SUBJECT38.ORAL.808 not applicable 1 13390 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.816 0 No days 7 days SUBJECT38.SKIN.816 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.816 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 7 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.816.mzXML 11712.SUBJECT38.SKIN.816 not applicable 12 16940 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.823 0 No days 7 days SUBJECT38.STOOL.823 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.823 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 7 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.823.mzXML 11712.SUBJECT38.STOOL.823 not applicable 4 13648 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.844 0 No days 7 days SUBJECT4.ORAL.844 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.844 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 7 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.844.mzXML 11712.SUBJECT4.ORAL.844 not applicable 14 14338 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.855 0 No days 7 days SUBJECT4.SKIN.855 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.855 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 7 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.855.mzXML 11712.SUBJECT4.SKIN.855 not applicable 11 16873 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.866 0 No days 7 days SUBJECT4.STOOL.866 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.866 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 7 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.866.mzXML 11712.SUBJECT4.STOOL.866 not applicable 7 14130 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.886 5 Yes days 7 days SUBJECT40.ORAL.886 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.886 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral Yes 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.886.mzXML 11712.SUBJECT40.ORAL.886 not applicable 2 13497 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.907 5 Yes days 7 days SUBJECT40.SKIN.907 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.907 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin Yes 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.907.mzXML 11712.SUBJECT40.SKIN.907 not applicable 12 16995 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.926 5 Yes days 7 days SUBJECT40.STOOL.926 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.926 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut Yes 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 7 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.926.mzXML 11712.SUBJECT40.STOOL.926 not applicable 4 13622 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.938 0 No days 7 days SUBJECT41.ORAL.938 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.938 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral Yes 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 7 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.938.mzXML 11712.SUBJECT41.ORAL.938 not applicable 1 13422 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.954 0 No days 7 days SUBJECT41.SKIN.954 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.954 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin Yes 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 7 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.954.mzXML 11712.SUBJECT41.SKIN.954 not applicable 10 16766 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.970 0 No days 7 days SUBJECT41.STOOL.970 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.970 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut Yes 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 7 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.970.mzXML 11712.SUBJECT41.STOOL.970 not applicable 6 14175 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.990 0 No days 7 days SUBJECT42.ORAL.990 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.990 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral Yes 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 7 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.990.mzXML 11712.SUBJECT42.ORAL.990 not applicable 2 13535 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1005 0 No days 7 days SUBJECT42.SKIN.1005 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1005 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin Yes 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 7 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1005.mzXML 11712.SUBJECT42.SKIN.1005 not applicable 10 16732 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1020 0 No days 7 days SUBJECT42.STOOL.1020 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1020 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut Yes 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 7 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1020.mzXML 11712.SUBJECT42.STOOL.1020 not applicable 6 14212 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1025 5 Yes days 7 days SUBJECT43.ORAL.1025 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:35:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1025 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 7 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1025.mzXML 11712.SUBJECT43.ORAL.1025 not applicable 9 13967 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1045 5 Yes days 7 days SUBJECT43.SKIN.1045 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:35:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1045 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 7 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1045.mzXML 11712.SUBJECT43.SKIN.1045 not applicable 13 17203 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1065 5 Yes days 7 days SUBJECT43.STOOL.1065 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1065 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 7 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1065.mzXML 11712.SUBJECT43.STOOL.1065 not applicable 3 14010 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT44.STOOL.1238 2 Yes days 7 days SUBJECT44.STOOL.1238 Yes Yes Yes 9 0.41 1 missing: not collected 3 days 34 weeks missing: not collected not applicable 47.5 cm 2520 g 11.17 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2655 grams vaginal SUBJECT44.STOOL.1238 33.84353741 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 6 days 12 days 6 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.1 22 Calories per ounce 61.16780045 mL/kg/day 7 days neonate Homo sapiens 11712-44 9606 28 hours Yes No 5 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses hispanic 27.32426304 mL/kg/day 597 mL 0 mL 482 mL 11712.SUBJECT44.STOOL.1238.mzXML 11712.SUBJECT44.STOOL.1238 not applicable 16 14289 fecal Singleton 4285 grams missing: not collected Yes Donor human milk Yes missing: not collected 9.325396825 5.357142857 0 missing: not collected No UCSDMI No No 11712 Formula Yes 9 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 9 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT53.STOOL.1265 2 Yes days 7 days SUBJECT53.STOOL.1265 No Yes Yes 8 0.2 2 missing: not collected 1 days 35 weeks missing: not collected not applicable 49.5 cm 2360 grams 9.63 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Not applicable 2310 grams vaginal SUBJECT53.STOOL.1265 53.4503632 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected not applicable days missing: not collected 5 days not applicable days 5 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.26 22 Calories per ounce 81.23486683 mL/kg/day 7 days neonate Homo sapiens 11712-53 9606 7 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 29 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Hispanic 27.78450363 mL/kg/day 883 mL 0 mL 459 mL 11712.SUBJECT53.STOOL.1265.mzXML 11712.SUBJECT53.STOOL.1265 not applicable 16 14287 fecal Singleton 2245 grams missing: not collected No Donor human milk No missing: not collected 4.872881356 -2.118644068 0 missing: not collected No RCHSD Yes Yes 11712 Donor human milk Yes not applicable Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT57.STOOL.1276 0 No days 7 days SUBJECT57.STOOL.1276 Yes Yes Yes 9 0.29 2 missing: not collected 0 days 34 weeks missing: not collected not applicable 44 cm 1930 grams 9.97 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 1995 grams vaginal SUBJECT57.STOOL.1276 6.36565507 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 3 days missing: not collected 6 days 9 days 6 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 21.65062916 mL/kg/day Yes Yes USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.72 22 Calories per ounce 50.88823094 mL/kg/day 7 days neonate Homo sapiens 11712-57 9606 1 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 11 days 35 years 0 doses 10 doses 0 doses 2 doses No 0 doses High School 0 doses 0 doses Hispanic 44.52257587 mL/kg/day 86 mL 292.5 mL 601.5 mL 11712.SUBJECT57.STOOL.1276.mzXML 11712.SUBJECT57.STOOL.1276 not applicable 16 14261 fecal Singleton 1850 grams missing: not collected No Formula No missing: not collected 4.14507772 3.367875648 29.84693878 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 2 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT8.ORAL.1132 2 Yes days 7 days SUBJECT8.ORAL.1132 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1132 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral Yes 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 7 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1132.mzXML 11712.SUBJECT8.ORAL.1132 not applicable 1 13412 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1149 2 Yes days 7 days SUBJECT8.SKIN.1149 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1149 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin Yes 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 7 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1149.mzXML 11712.SUBJECT8.SKIN.1149 not applicable 15 17099 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1165 2 Yes days 7 days SUBJECT8.STOOL.1165 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1165 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut Yes 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 7 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1165.mzXML 11712.SUBJECT8.STOOL.1165 not applicable 5 13698 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1172 2 Yes days 7 days SUBJECT9.ORAL.1172 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1172 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 7 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL not_used 11712.SUBJECT9.ORAL.1172 didn't inject 14 14335 not_used Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1191 2 Yes days 7 days SUBJECT9.SKIN.1191 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1191 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 7 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1191.mzXML 11712.SUBJECT9.SKIN.1191 not applicable 11 16900 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1211 2 Yes days 7 days SUBJECT9.STOOL.1211 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1211 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut Yes 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 7 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1211.mzXML 11712.SUBJECT9.STOOL.1211 not applicable 5 13725 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.7 0 No days 8 days SUBJECT1.ORAL.7 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.7 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 8 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.7.mzXML 11712.SUBJECT1.ORAL.7 not applicable 14 14387 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.17 0 No days 8 days SUBJECT1.SKIN.17 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.17 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 8 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.17.mzXML 11712.SUBJECT1.SKIN.17 not applicable 11 16848 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.26 0 No days 8 days SUBJECT1.STOOL.26 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.26 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 8 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.26.mzXML 11712.SUBJECT1.STOOL.26 not applicable 7 14099 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.ORAL.37 0 No days 8 days SUBJECT10.ORAL.37 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.ORAL.37 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat oral human-oral No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 8 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.ORAL.37.mzXML 11712.SUBJECT10.ORAL.37 not applicable 14 14389 oral Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.SKIN.45 0 No days 8 days SUBJECT10.SKIN.45 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.SKIN.45 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat skin human-skin No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 8 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.SKIN.45.mzXML 11712.SUBJECT10.SKIN.45 not applicable 11 16842 skin Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT10.STOOL.52 0 No days 8 days SUBJECT10.STOOL.52 Yes Yes Yes 9 0.29 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 46.5 cm 2280 g 10.54 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable Yes No 2090 grams c-section SUBJECT10.STOOL.52 60.15037594 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 7 days missing: not collected 6 days not applicable days 6 days 7 days 292 0 urban biome human-associated habitat stool human-gut No 5.325814536 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.5 20 Calories per ounce 65.03759398 mL/kg/day 8 days neonate Homo sapiens 11712-10 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 8 days 40 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 4.887218045 mL/kg/day 960 mL 85 mL 78 mL 11712.SUBJECT10.STOOL.52.mzXML 11712.SUBJECT10.STOOL.52 not applicable 6 14239 fecal Singleton 2045 grams missing: not collected No Donor human milk No missing: not collected 10.30701754 -8.333333333 7.569011576 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 0 days MD Microbiome Yes Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.70 0 No days 8 days SUBJECT12.ORAL.70 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.70 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 8 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.70.mzXML 11712.SUBJECT12.ORAL.70 not applicable 14 14372 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.85 0 No days 8 days SUBJECT12.SKIN.85 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.85 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 8 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.85.mzXML 11712.SUBJECT12.SKIN.85 not applicable 12 16956 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.100 0 No days 8 days SUBJECT12.STOOL.100 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.100 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 8 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.100.mzXML 11712.SUBJECT12.STOOL.100 not applicable 7 14083 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.123 0 No days 8 days SUBJECT14.ORAL.123 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.123 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 8 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.123.mzXML 11712.SUBJECT14.ORAL.123 not applicable 1 13424 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.133 0 No days 8 days SUBJECT14.SKIN.133 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.133 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 8 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.133.mzXML 11712.SUBJECT14.SKIN.133 not applicable 10 16804 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.142 0 No days 8 days SUBJECT14.STOOL.142 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 19:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.142 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 8 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.142.mzXML 11712.SUBJECT14.STOOL.142 not applicable 6 14221 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No Yes No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.160 0 No days 8 days SUBJECT16.ORAL.160 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.160 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 8 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.160.mzXML 11712.SUBJECT16.ORAL.160 not applicable 1 13423 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.177 0 No days 8 days SUBJECT16.SKIN.177 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.177 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 8 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.177.mzXML 11712.SUBJECT16.SKIN.177 not applicable 10 16789 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.194 0 No days 8 days SUBJECT16.STOOL.194 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.194 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 9 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.194.mzXML 11712.SUBJECT16.STOOL.194 not applicable 6 14237 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.217 7 Yes days 8 days SUBJECT17.ORAL.217 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.217 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 8 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.217.mzXML 11712.SUBJECT17.ORAL.217 not applicable 1 13385 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.239 7 Yes days 8 days SUBJECT17.SKIN.239 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.239 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 8 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.239.mzXML 11712.SUBJECT17.SKIN.239 not applicable 10 16797 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.261 7 Yes days 8 days SUBJECT17.STOOL.261 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.261 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 8 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.261.mzXML 11712.SUBJECT17.STOOL.261 not applicable 6 14202 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.276 2 Yes days 8 days SUBJECT18.ORAL.276 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.276 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 8 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.276.mzXML 11712.SUBJECT18.ORAL.276 not applicable 9 13968 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.298 2 Yes days 8 days SUBJECT18.SKIN.298 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.298 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 8 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.298.mzXML 11712.SUBJECT18.SKIN.298 not applicable 15 17132 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.320 2 Yes days 8 days SUBJECT18.STOOL.320 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.320 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 8 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.320.mzXML 11712.SUBJECT18.STOOL.320 not applicable 3 14028 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.1235 0 No days 8 days SUBJECT19.ORAL.1235 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.1235 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral missing: not collected 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.1235.mzXML 11712.SUBJECT19.ORAL.1235 not applicable 9 13939 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.355 0 No days 8 days SUBJECT19.SKIN.355 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.355 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.355.mzXML 11712.SUBJECT19.SKIN.355 not applicable 13 17209 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.371 0 No days 8 days SUBJECT19.STOOL.371 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.371 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.371.mzXML 11712.SUBJECT19.STOOL.371 not applicable 4 13581 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.397 0 No days 8 days SUBJECT20.ORAL.397 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.397 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.397.mzXML 11712.SUBJECT20.ORAL.397 not applicable 9 13898 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.411 0 No days 8 days SUBJECT20.SKIN.411 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.411 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.411.mzXML 11712.SUBJECT20.SKIN.411 not applicable 15 17130 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.427 0 No days 8 days SUBJECT20.STOOL.427 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.427 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.427.mzXML 11712.SUBJECT20.STOOL.427 not applicable 3 13988 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.443 7 Yes days 8 days SUBJECT21.ORAL.443 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.443 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 8 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.442.A.mzXML 11712.SUBJECT21.ORAL.442.A "Was a duplicate, verified which sample is which" 8 13791 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.453 7 Yes days 8 days SUBJECT21.SKIN.453 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.453 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 8 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.453.mzXML 11712.SUBJECT21.SKIN.453 not applicable 15 17040 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.463 7 Yes days 8 days SUBJECT21.STOOL.463 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.463 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 8 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.463.mzXML 11712.SUBJECT21.STOOL.463 not applicable 3 14041 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.487 0 No days 8 days SUBJECT23.ORAL.487 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.487 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 8 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.487.mzXML 11712.SUBJECT23.ORAL.487 not applicable 9 13918 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.496 0 No days 8 days SUBJECT23.SKIN.496 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.496 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 8 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL not applicable not applicable "duplicate sample, cannot determine which sample is which, did not use samples, 11712.SUBJECT23.SKIN.496.B.mzXML and 11712.SUBJECT23.SKIN.496.A.mzXML" not applicable not applicable not applicable Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.505 0 No days 8 days SUBJECT23.STOOL.505 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.505 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 8 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.505.mzXML 11712.SUBJECT23.STOOL.505 not applicable 4 13666 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.535 0 No days 8 days SUBJECT25.ORAL.535 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.535 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 8 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.535.mzXML 11712.SUBJECT25.ORAL.535 not applicable 9 13917 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.544 0 No days 8 days SUBJECT25.SKIN.544 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.544 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 8 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.SKIN.544.mzXML 11712.SUBJECT25.SKIN.544 not applicable 13 17160 skin Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.553 0 No days 8 days SUBJECT25.STOOL.553 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.553 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 8 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.553.mzXML 11712.SUBJECT25.STOOL.553 not applicable 4 13642 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.ORAL.591 0 No days 8 days SUBJECT28.ORAL.591 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.ORAL.591 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat oral human-oral No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 8 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL not_used 11712.SUBJECT28.ORAL.591 didn't inject 1 13407 not_used Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.SKIN.599 0 No days 8 days SUBJECT28.SKIN.599 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.SKIN.599 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat skin human-skin No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 8 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.SKIN.599.mzXML 11712.SUBJECT28.SKIN.599 not applicable 10 16776 skin Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT28.STOOL.606 0 No days 8 days SUBJECT28.STOOL.606 Yes Yes Yes 8 0.36 1 missing: not collected 5 days 36 weeks missing: not collected not applicable 55 cm 4100 g 13.55 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3917 grams vaginal SUBJECT28.STOOL.606 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 3 urban biome human-associated habitat stool human-gut No 87.10801394 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 20 Calories per ounce 22.12543554 mL/kg/day 8 days neonate Homo sapiens 11712-28 9606 1 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 22.12543554 mL/kg/day 0 mL 2500 mL 635 mL 11712.SUBJECT28.STOOL.606.mzXML 11712.SUBJECT28.STOOL.606 not applicable 6 14213 fecal Singleton 3928 grams missing: not collected No Formula Yes missing: not collected 4.195121951 -4.463414634 79.74481659 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.626 0 No days 8 days SUBJECT3.ORAL.626 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.626 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 8 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.626.mzXML 11712.SUBJECT3.ORAL.626 not applicable 14 14404 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.634 0 No days 8 days SUBJECT3.SKIN.634 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 20:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.634 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 8 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.634.mzXML 11712.SUBJECT3.SKIN.634 not applicable 11 16913 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.639 0 No days 8 days SUBJECT3.STOOL.639 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 22:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.639 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 8 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL not_used 11712.SUBJECT3.STOOL.639 "a little bit there, but not a sample" 6 14228 not_used Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.648 2 Yes days 8 days SUBJECT30.ORAL.648 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.648 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 8 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.648.mzXML 11712.SUBJECT30.ORAL.648 not applicable 14 14331 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.665 2 Yes days 8 days SUBJECT30.SKIN.665 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.665 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 8 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.665.mzXML 11712.SUBJECT30.SKIN.665 not applicable 11 16892 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.682 2 Yes days 8 days SUBJECT30.STOOL.682 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.682 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 8 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.682.mzXML 11712.SUBJECT30.STOOL.682 not applicable 7 14123 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.693 2 Yes days 8 days SUBJECT31.ORAL.693 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.693 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 8 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.693.mzXML 11712.SUBJECT31.ORAL.693 not applicable 14 14408 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2126 2 Yes days 8 days SUBJECT31.SKIN.2126 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2126 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 8 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2126.mzXML 11712.SUBJECT31.SKIN.2126 not applicable 11 16871 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.705 2 Yes days 8 days SUBJECT31.STOOL.705 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.705 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 8 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.705.mzXML 11712.SUBJECT31.STOOL.705 not applicable 7 14140 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.734 0 No days 8 days SUBJECT34.ORAL.734 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.734 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 8 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.734.mzXML 11712.SUBJECT34.ORAL.734 not applicable 1 13377 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.742 0 No days 8 days SUBJECT34.SKIN.742 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.742 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 8 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.742.mzXML 11712.SUBJECT34.SKIN.742 not applicable 12 16935 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.751 0 No days 8 days SUBJECT34.STOOL.751 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.751 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 8 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.751.mzXML 11712.SUBJECT34.STOOL.751 not applicable 7 14112 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.1233 2 Yes days 8 days SUBJECT37.ORAL.1233 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.1233 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 8 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.1233.mzXML 11712.SUBJECT37.ORAL.1233 not applicable 14 14317 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.1262 2 Yes days 8 days SUBJECT37.SKIN.1262 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.1262 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 8 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.1262.mzXML 11712.SUBJECT37.SKIN.1262 not applicable 13 17212 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.1234 2 Yes days 8 days SUBJECT37.STOOL.1234 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.1234 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 8 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.1234.mzXML 11712.SUBJECT37.STOOL.1234 not applicable 16 14308 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.809 0 No days 8 days SUBJECT38.ORAL.809 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.809 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 8 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.809.mzXML 11712.SUBJECT38.ORAL.809 not applicable 2 13537 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.817 0 No days 8 days SUBJECT38.SKIN.817 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.817 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 8 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.817.mzXML 11712.SUBJECT38.SKIN.817 not applicable 12 17007 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.824 0 No days 8 days SUBJECT38.STOOL.824 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.824 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 8 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.824.mzXML 11712.SUBJECT38.STOOL.824 not applicable 5 13733 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.845 0 No days 8 days SUBJECT4.ORAL.845 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.845 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 8 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.845.mzXML 11712.SUBJECT4.ORAL.845 not applicable 14 14353 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.856 0 No days 8 days SUBJECT4.SKIN.856 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.856 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 8 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.856.mzXML 11712.SUBJECT4.SKIN.856 not applicable 11 16874 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.867 0 No days 8 days SUBJECT4.STOOL.867 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.867 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 8 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.867.mzXML 11712.SUBJECT4.STOOL.867 not applicable 6 14183 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.887 5 Yes days 8 days SUBJECT40.ORAL.887 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.887 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.887.mzXML 11712.SUBJECT40.ORAL.887 not applicable 2 13566 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.908 5 Yes days 8 days SUBJECT40.SKIN.908 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.908 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.908.mzXML 11712.SUBJECT40.SKIN.908 not applicable 12 16964 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.927 5 Yes days 8 days SUBJECT40.STOOL.927 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.927 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 8 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.927.mzXML 11712.SUBJECT40.STOOL.927 not applicable 4 13599 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.939 0 No days 8 days SUBJECT41.ORAL.939 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.939 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 8 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.939.mzXML 11712.SUBJECT41.ORAL.939 not applicable 1 13434 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.955 0 No days 8 days SUBJECT41.SKIN.955 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.955 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 8 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.955.mzXML 11712.SUBJECT41.SKIN.955 not applicable 10 16803 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.971 0 No days 8 days SUBJECT41.STOOL.971 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.971 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 8 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.971.mzXML 11712.SUBJECT41.STOOL.971 not applicable 5 13741 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.991 0 No days 8 days SUBJECT42.ORAL.991 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.991 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 8 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.991.mzXML 11712.SUBJECT42.ORAL.991 not applicable 2 13467 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1006 0 No days 8 days SUBJECT42.SKIN.1006 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1006 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 8 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1006.mzXML 11712.SUBJECT42.SKIN.1006 not applicable 10 16816 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1021 0 No days 8 days SUBJECT42.STOOL.1021 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1021 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 8 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1026 5 Yes days 8 days SUBJECT43.ORAL.1026 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1026 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 8 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1026.mzXML 11712.SUBJECT43.ORAL.1026 not applicable 9 13899 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1046 5 Yes days 8 days SUBJECT43.SKIN.1046 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1046 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 8 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1046.mzXML 11712.SUBJECT43.SKIN.1046 not applicable 13 17199 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1066 5 Yes days 8 days SUBJECT43.STOOL.1066 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1066 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 8 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1066.mzXML 11712.SUBJECT43.STOOL.1066 not applicable 3 14031 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT51.STOOL.1260 0 No days 8 days SUBJECT51.STOOL.1260 Yes Yes Yes 9 0.21 2 missing: not collected 4 days 34 weeks missing: not collected not applicable 46.5 cm 2540 grams 11.75 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2415 grams vaginal SUBJECT51.STOOL.1260 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 105 1 urban biome human-associated habitat stool human-gut missing: not collected 27.61529809 mL/kg/day No Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 20 Calories per ounce 76.60292463 mL/kg/day 8 days neonate Homo sapiens 11712-51 9606 1 hours No No 1 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 32 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 3 doses "White, non-hispanic" 76.60292463 mL/kg/day 0 mL 491 mL 1362 mL 11712.SUBJECT51.STOOL.1260.mzXML 11712.SUBJECT51.STOOL.1260 not applicable 16 14294 fecal Singleton 2350 grams missing: not collected No Formula No missing: not collected 7.480314961 -4.921259843 26.49757151 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT54.STOOL.1268 0 No days 8 days SUBJECT54.STOOL.1268 Yes Yes No 9 0.56 2 missing: not collected 0 days 35 weeks missing: not collected not applicable 48 cm 2675 grams 11.61 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:55:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2460 grams c-section SUBJECT54.STOOL.1268 56.76902537 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 5 days 105 3 urban biome human-associated habitat stool human-gut missing: not collected 19.91989319 mL/kg/day Yes No USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.3 22 Calories per ounce 63.55140187 mL/kg/day 8 days neonate Homo sapiens 11712-54 9606 5 hours No No 4 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 8 days 34 years 0 doses 0 doses 0 doses 0 doses No 1 doses High School 0 doses 0 doses Hispanic 6.782376502 mL/kg/day 1063 mL 373 mL 127 mL 11712.SUBJECT54.STOOL.1268.mzXML 11712.SUBJECT54.STOOL.1268 not applicable 16 14303 fecal Singleton 2425 grams missing: not collected Yes Donor human milk No missing: not collected 9.345794393 -8.037383178 23.8643634 missing: not collected Yes RCHSD Yes No 11712 Donor human milk Yes 0 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 6 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT8.ORAL.1116 2 Yes days 8 days SUBJECT8.ORAL.1116 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1116 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 8 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1116.mzXML 11712.SUBJECT8.ORAL.1116 not applicable 1 13400 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1133 2 Yes days 8 days SUBJECT8.SKIN.1133 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1133 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 8 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1133.mzXML 11712.SUBJECT8.SKIN.1133 not applicable 12 16986 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1150 2 Yes days 8 days SUBJECT8.STOOL.1150 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1150 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 8 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1150.mzXML 11712.SUBJECT8.STOOL.1150 not applicable 5 13734 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1173 2 Yes days 8 days SUBJECT9.ORAL.1173 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1173 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 8 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1173.mzXML 11712.SUBJECT9.ORAL.1173 not applicable 8 13823 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1192 2 Yes days 8 days SUBJECT9.SKIN.1192 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1192 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 8 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1192.mzXML 11712.SUBJECT9.SKIN.1192 not applicable 15 17042 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1212 2 Yes days 8 days SUBJECT9.STOOL.1212 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1212 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 8 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1212.mzXML 11712.SUBJECT9.STOOL.1212 not applicable 5 13761 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.8 0 No days 9 days SUBJECT1.ORAL.8 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.8 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 9 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL not_used 11712.SUBJECT1.ORAL.8 didn't inject 14 14324 not_used Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.18 0 No days 9 days SUBJECT1.SKIN.18 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.18 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 9 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.18.mzXML 11712.SUBJECT1.SKIN.18 not applicable 11 16832 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.27 0 No days 9 days SUBJECT1.STOOL.27 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.27 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 9 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.27.mzXML 11712.SUBJECT1.STOOL.27 not applicable 7 14131 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.71 0 No days 9 days SUBJECT12.ORAL.71 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.71 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 9 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.71.mzXML 11712.SUBJECT12.ORAL.71 not applicable 14 14369 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.86 0 No days 9 days SUBJECT12.SKIN.86 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.86 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 9 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.86.mzXML 11712.SUBJECT12.SKIN.86 not applicable 11 16828 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.101 0 No days 9 days SUBJECT12.STOOL.101 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.101 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 9 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.101.mzXML 11712.SUBJECT12.STOOL.101 not applicable 6 14171 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.124 0 No days 9 days SUBJECT14.ORAL.124 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.124 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 9 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.124.mzXML 11712.SUBJECT14.ORAL.124 not applicable 1 13396 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.134 0 No days 9 days SUBJECT14.SKIN.134 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.134 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 9 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.134.mzXML 11712.SUBJECT14.SKIN.134 not applicable 10 16743 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.143 0 No days 9 days SUBJECT14.STOOL.143 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 19:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.143 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 9 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.143.mzXML 11712.SUBJECT14.STOOL.143 not applicable 6 14161 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.162 0 No days 9 days SUBJECT16.ORAL.162 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.162 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 9 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.162.mzXML 11712.SUBJECT16.ORAL.162 not applicable 1 13381 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.180 0 No days 9 days SUBJECT16.SKIN.180 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.180 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 9 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.180.mzXML 11712.SUBJECT16.SKIN.180 not applicable 10 16813 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.195 0 No days 9 days SUBJECT16.STOOL.195 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.195 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 10 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.195.B.mzXML 11712.SUBJECT16.STOOL.195.B "Was a duplicate, verified which sample is which" 5 13730 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.218 7 Yes days 9 days SUBJECT17.ORAL.218 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.218 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 9 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.218.A.mzXML 11712.SUBJECT17.ORAL.218.A not applicable 1 13460 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.240 7 Yes days 9 days SUBJECT17.SKIN.240 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.240 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 9 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.240.mzXML 11712.SUBJECT17.SKIN.240 not applicable 10 16736 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.262 7 Yes days 9 days SUBJECT17.STOOL.262 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.262 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 9 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.262.mzXML 11712.SUBJECT17.STOOL.262 not applicable 6 14165 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.277 2 Yes days 9 days SUBJECT18.ORAL.277 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.277 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 9 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.277.mzXML 11712.SUBJECT18.ORAL.277 not applicable 9 13955 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.299 2 Yes days 9 days SUBJECT18.SKIN.299 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.299 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 9 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.299.mzXML 11712.SUBJECT18.SKIN.299 not applicable 15 17065 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.321 2 Yes days 9 days SUBJECT18.STOOL.321 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.321 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 9 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.321.mzXML 11712.SUBJECT18.STOOL.321 not applicable 3 14038 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.341 0 No days 9 days SUBJECT19.ORAL.341 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.341 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.341.mzXML 11712.SUBJECT19.ORAL.341 not applicable 9 13963 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.356 0 No days 9 days SUBJECT19.SKIN.356 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.356 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.356.mzXML 11712.SUBJECT19.SKIN.356 not applicable 13 17148 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.372 0 No days 9 days SUBJECT19.STOOL.372 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.372 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.372.mzXML 11712.SUBJECT19.STOOL.372 not applicable 4 13615 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.398 0 No days 9 days SUBJECT20.ORAL.398 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.398 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.398.mzXML 11712.SUBJECT20.ORAL.398 not applicable 9 13932 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.412 0 No days 9 days SUBJECT20.SKIN.412 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.412 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.412.mzXML 11712.SUBJECT20.SKIN.412 not applicable 15 17067 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.428 0 No days 9 days SUBJECT20.STOOL.428 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.428 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.STOOL.428 didn't inject 3 13992 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.444 7 Yes days 9 days SUBJECT21.ORAL.444 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.444 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 9 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.444.mzXML 11712.SUBJECT21.ORAL.444 not applicable 8 13852 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.454 7 Yes days 9 days SUBJECT21.SKIN.454 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.454 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 9 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.454.mzXML 11712.SUBJECT21.SKIN.454 not applicable 15 17117 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.464 7 Yes days 9 days SUBJECT21.STOOL.464 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.464 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 9 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.464.mzXML 11712.SUBJECT21.STOOL.464 not applicable 3 14023 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.ORAL.488 0 No days 9 days SUBJECT23.ORAL.488 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.ORAL.488 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat oral human-oral No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 9 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.ORAL.488.mzXML 11712.SUBJECT23.ORAL.488 not applicable 9 13907 oral Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.SKIN.497 0 No days 9 days SUBJECT23.SKIN.497 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.SKIN.497 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat skin human-skin No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 9 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.SKIN.497.mzXML 11712.SUBJECT23.SKIN.497 not applicable 13 17141 skin Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT23.STOOL.506 0 No days 9 days SUBJECT23.STOOL.506 Yes Yes Yes 8 0.23 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 52 cm 3850 g 14.24 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3484 grams c-section SUBJECT23.STOOL.506 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 22 urban biome human-associated habitat stool human-gut No 82.85714286 mL/kg/day No Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.48 20 Calories per ounce 1.818181818 mL/kg/day 9 days neonate Homo sapiens 11712-23 9606 6 hours Yes No 1 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 29 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 1.818181818 mL/kg/day 0 mL 2233 mL 49 mL 11712.SUBJECT23.STOOL.506.mzXML 11712.SUBJECT23.STOOL.506 not applicable 4 13579 fecal Singleton 3410 grams missing: not collected Yes Formula No missing: not collected 11.42857143 -9.506493506 97.85276074 missing: not collected No UCSDMI No No 11712 Formula Yes 2 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.ORAL.536 0 No days 9 days SUBJECT25.ORAL.536 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.ORAL.536 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat oral human-oral No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 9 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.ORAL.536.mzXML 11712.SUBJECT25.ORAL.536 not applicable 9 13940 oral Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.SKIN.545 0 No days 9 days SUBJECT25.SKIN.545 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.SKIN.545 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat skin human-skin No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 9 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.SKIN.545.mzXML 11712.SUBJECT25.SKIN.545 not applicable 13 17196 skin Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT25.STOOL.554 0 No days 9 days SUBJECT25.STOOL.554 Yes Yes Yes 9 0.24 1 missing: not collected 4 days 36 weeks missing: not collected not applicable 46 cm 2240 g 10.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2245 grams vaginal SUBJECT25.STOOL.554 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days not applicable days 4 days 5 days 292 9 urban biome human-associated habitat stool human-gut No 59.75765306 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.34 20 Calories per ounce 48.78826531 mL/kg/day 9 days neonate Homo sapiens 11712-25 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 24 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses Asian 48.78826531 mL/kg/day 0 mL 937 mL 765 mL 11712.SUBJECT25.STOOL.554.mzXML 11712.SUBJECT25.STOOL.554 not applicable 4 13593 fecal Singleton 2158 grams missing: not collected No Formula No missing: not collected 3.660714286 0.223214286 55.05287897 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.ORAL.627 0 No days 9 days SUBJECT3.ORAL.627 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.ORAL.627 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 9 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.ORAL.627.mzXML 11712.SUBJECT3.ORAL.627 not applicable 14 14371 oral Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.SKIN.635 0 No days 9 days SUBJECT3.SKIN.635 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.SKIN.635 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 9 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.SKIN.635.mzXML 11712.SUBJECT3.SKIN.635 not applicable 11 16885 skin Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT3.STOOL.640 0 No days 9 days SUBJECT3.STOOL.640 No Yes Yes 8 0.21 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 45 cm 1960 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No not applicable 2002 grams c-section SUBJECT3.STOOL.640 69.02332362 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected not applicable days missing: not collected 5 days 7 days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.76 20 Calories per ounce 91.7638484 mL/kg/day 9 days neonate Homo sapiens 11712-3 9606 21 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 9 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 22.74052478 mL/kg/day 947 mL 0 mL 312 mL 11712.SUBJECT3.STOOL.640.mzXML 11712.SUBJECT3.STOOL.640 not applicable 6 14180 fecal Triplet 1864 grams missing: not collected No Donor human milk No missing: not collected 4.897959184 2.142857143 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.649 2 Yes days 9 days SUBJECT30.ORAL.649 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.649 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 9 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.649.mzXML 11712.SUBJECT30.ORAL.649 not applicable 14 14325 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.666 2 Yes days 9 days SUBJECT30.SKIN.666 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.666 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 9 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.666.mzXML 11712.SUBJECT30.SKIN.666 not applicable 11 16846 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.683 2 Yes days 9 days SUBJECT30.STOOL.683 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.683 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 9 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.683.mzXML 11712.SUBJECT30.STOOL.683 not applicable 6 14194 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.694 2 Yes days 9 days SUBJECT31.ORAL.694 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.694 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 9 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.694.mzXML 11712.SUBJECT31.ORAL.694 not applicable 14 14374 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.706 2 Yes days 9 days SUBJECT31.STOOL.706 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.706 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 9 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.706.mzXML 11712.SUBJECT31.STOOL.706 not applicable 7 14082 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.735 0 No days 9 days SUBJECT34.ORAL.735 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.735 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 9 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.735.mzXML 11712.SUBJECT34.ORAL.735 not applicable 1 13413 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.743 0 No days 9 days SUBJECT34.SKIN.743 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.743 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 9 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.743.mzXML 11712.SUBJECT34.SKIN.743 not applicable 12 16961 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.752 0 No days 9 days SUBJECT34.STOOL.752 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.752 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 9 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.752.mzXML 11712.SUBJECT34.STOOL.752 not applicable 7 14135 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.ORAL.810 0 No days 9 days SUBJECT38.ORAL.810 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.ORAL.810 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 9 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.ORAL.810.mzXML 11712.SUBJECT38.ORAL.810 not applicable 2 13471 oral Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.SKIN.818 0 No days 9 days SUBJECT38.SKIN.818 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.SKIN.818 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 9 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.SKIN.818.mzXML 11712.SUBJECT38.SKIN.818 not applicable 12 16933 skin Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT38.STOOL.825 0 No days 9 days SUBJECT38.STOOL.825 Yes Yes Yes 9 0.59 1 missing: not collected 5 days 34 weeks missing: not collected not applicable 48 cm 2230 g 9.68 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2190 grams c-section SUBJECT38.STOOL.825 20.81998719 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 6 days not applicable days 6 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.68 22 Calories per ounce 65.69506726 mL/kg/day 9 days neonate Homo sapiens 11712-38 9606 12 hours Yes No 6 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 9 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 44.87508008 mL/kg/day 325 mL 0 mL 700.5 mL 11712.SUBJECT38.STOOL.825.mzXML 11712.SUBJECT38.STOOL.825 not applicable 4 13611 fecal Singleton 2110 grams missing: not collected No Donor human milk No missing: not collected 5.381165919 -1.793721973 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.846 0 No days 9 days SUBJECT4.ORAL.846 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.846 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 9 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.846.mzXML 11712.SUBJECT4.ORAL.846 not applicable 14 14376 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.857 0 No days 9 days SUBJECT4.SKIN.857 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.857 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 9 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.857.mzXML 11712.SUBJECT4.SKIN.857 not applicable 11 16910 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.868 0 No days 9 days SUBJECT4.STOOL.868 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.868 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 9 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.868.mzXML 11712.SUBJECT4.STOOL.868 not applicable 7 14098 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.888 5 Yes days 9 days SUBJECT40.ORAL.888 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.888 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.888.mzXML 11712.SUBJECT40.ORAL.888 not applicable 2 13561 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.909 5 Yes days 9 days SUBJECT40.SKIN.909 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.909 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 9 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.909.mzXML 11712.SUBJECT40.SKIN.909 not applicable 12 16977 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.940 0 No days 9 days SUBJECT41.ORAL.940 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.940 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 9 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL not_used 11712.SUBJECT41.ORAL.940 no signal 2 13482 not_used Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.956 0 No days 9 days SUBJECT41.SKIN.956 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.956 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 9 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.956.mzXML 11712.SUBJECT41.SKIN.956 not applicable 10 16794 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.972 0 No days 9 days SUBJECT41.STOOL.972 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.972 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 9 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.972.mzXML 11712.SUBJECT41.STOOL.972 not applicable 5 13778 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.1264 0 No days 9 days SUBJECT42.ORAL.1264 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.1264 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral missing: not collected 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 9 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.1264.mzXML 11712.SUBJECT42.ORAL.1264 not applicable 1 13458 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1007 0 No days 9 days SUBJECT42.SKIN.1007 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1007 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 9 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1007.mzXML 11712.SUBJECT42.SKIN.1007 not applicable 10 16744 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1022 0 No days 9 days SUBJECT42.STOOL.1022 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1022 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 9 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1067 5 Yes days 9 days SUBJECT43.STOOL.1067 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1067 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 9 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1067.mzXML 11712.SUBJECT43.STOOL.1067 not applicable 3 13998 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1117 2 Yes days 9 days SUBJECT8.ORAL.1117 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1117 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 9 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1117.mzXML 11712.SUBJECT8.ORAL.1117 not applicable 8 13822 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1134 2 Yes days 9 days SUBJECT8.SKIN.1134 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1134 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 9 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1134.mzXML 11712.SUBJECT8.SKIN.1134 not applicable 12 16939 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1151 2 Yes days 9 days SUBJECT8.STOOL.1151 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1151 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 9 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1151.mzXML 11712.SUBJECT8.STOOL.1151 not applicable 3 13996 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected Yes No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1174 2 Yes days 9 days SUBJECT9.ORAL.1174 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:12:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1174 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 9 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1174.mzXML 11712.SUBJECT9.ORAL.1174 not applicable 8 13844 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1193 2 Yes days 9 days SUBJECT9.SKIN.1193 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:12:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1193 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 9 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL not_used 11712.SUBJECT9.SKIN.1193 didn't inject 15 17079 not_used Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1213 2 Yes days 9 days SUBJECT9.STOOL.1213 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:12:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1213 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 9 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1213.mzXML 11712.SUBJECT9.STOOL.1213 not applicable 4 13662 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.9 0 No days 10 days SUBJECT1.ORAL.9 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.9 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 10 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.9.mzXML 11712.SUBJECT1.ORAL.9 not applicable 14 14336 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.19 0 No days 10 days SUBJECT1.SKIN.19 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.19 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 10 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.19.mzXML 11712.SUBJECT1.SKIN.19 not applicable 11 16872 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.28 0 No days 10 days SUBJECT1.STOOL.28 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.28 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 10 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.28.mzXML 11712.SUBJECT1.STOOL.28 not applicable 6 14182 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.72 0 No days 10 days SUBJECT12.ORAL.72 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.72 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 10 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.72.mzXML 11712.SUBJECT12.ORAL.72 not applicable 5 13774 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.87 0 No days 10 days SUBJECT12.SKIN.87 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.87 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 10 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.87.mzXML 11712.SUBJECT12.SKIN.87 not applicable 11 16889 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.102 0 No days 10 days SUBJECT12.STOOL.102 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.102 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 10 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.102.mzXML 11712.SUBJECT12.STOOL.102 not applicable 6 14243 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.ORAL.125 0 No days 10 days SUBJECT14.ORAL.125 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.ORAL.125 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 10 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.ORAL.125.mzXML 11712.SUBJECT14.ORAL.125 not applicable 2 13520 oral Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.SKIN.135 0 No days 10 days SUBJECT14.SKIN.135 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.SKIN.135 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 10 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.SKIN.135.mzXML 11712.SUBJECT14.SKIN.135 not applicable 10 16758 skin Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT14.STOOL.144 0 No days 10 days SUBJECT14.STOOL.144 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 49 cm 2325 g 9.68 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2250 grams vaginal SUBJECT14.STOOL.144 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 8 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 2.764976959 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 34.39631336 mL/kg/day 10 days neonate Homo sapiens 11712-14 9606 3 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 31 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses white 34.39631336 mL/kg/day 0 mL 45 mL 559.8 mL 11712.SUBJECT14.STOOL.144.mzXML 11712.SUBJECT14.STOOL.144 not applicable 6 14177 fecal Twin 2162 grams missing: not collected No Formula No missing: not collected 7.010752688 -3.225806452 7.44047619 missing: not collected Yes UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 7 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.163 0 No days 10 days SUBJECT16.ORAL.163 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.163 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 10 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.163.mzXML 11712.SUBJECT16.ORAL.163 not applicable 1 13421 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.181 0 No days 10 days SUBJECT16.SKIN.181 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.181 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 10 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.181.mzXML 11712.SUBJECT16.SKIN.181 not applicable 10 16740 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.196 0 No days 10 days SUBJECT16.STOOL.196 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.196 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 11 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.219 7 Yes days 10 days SUBJECT17.ORAL.219 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.219 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 10 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.219.mzXML 11712.SUBJECT17.ORAL.219 not applicable 2 13478 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.241 7 Yes days 10 days SUBJECT17.SKIN.241 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.241 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 10 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.241.mzXML 11712.SUBJECT17.SKIN.241 not applicable 10 16755 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.263 7 Yes days 10 days SUBJECT17.STOOL.263 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.263 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 10 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.263.mzXML 11712.SUBJECT17.STOOL.263 not applicable 3 14054 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.278 2 Yes days 10 days SUBJECT18.ORAL.278 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.278 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 10 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.278.mzXML 11712.SUBJECT18.ORAL.278 not applicable 9 13893 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.300 2 Yes days 10 days SUBJECT18.SKIN.300 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.300 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 10 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.300.mzXML 11712.SUBJECT18.SKIN.300 not applicable 13 17208 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.322 2 Yes days 10 days SUBJECT18.STOOL.322 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.322 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 10 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.322.mzXML 11712.SUBJECT18.STOOL.322 not applicable 4 13616 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.342 0 No days 10 days SUBJECT19.ORAL.342 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.342 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.342.mzXML 11712.SUBJECT19.ORAL.342 not applicable 9 13937 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.357 0 No days 10 days SUBJECT19.SKIN.357 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.357 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.357.mzXML 11712.SUBJECT19.SKIN.357 not applicable 13 17149 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.373 0 No days 10 days SUBJECT19.STOOL.373 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.373 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.373.mzXML 11712.SUBJECT19.STOOL.373 not applicable 4 13591 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.399 0 No days 10 days SUBJECT20.ORAL.399 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.399 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.399.mzXML 11712.SUBJECT20.ORAL.399 not applicable 9 13912 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.413 0 No days 10 days SUBJECT20.SKIN.413 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.413 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.413.mzXML 11712.SUBJECT20.SKIN.413 not applicable 15 17078 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.429 0 No days 10 days SUBJECT20.STOOL.429 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.429 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.STOOL.429 didn't inject 6 14215 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT21.ORAL.445 7 Yes days 10 days SUBJECT21.ORAL.445 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.ORAL.445 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat oral human-oral No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 10 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.ORAL.445.mzXML 11712.SUBJECT21.ORAL.445 not applicable 8 13803 oral Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.SKIN.455 7 Yes days 10 days SUBJECT21.SKIN.455 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.SKIN.455 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat skin human-skin No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 10 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.SKIN.455.mzXML 11712.SUBJECT21.SKIN.455 not applicable 15 17114 skin Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT21.STOOL.465 7 Yes days 10 days SUBJECT21.STOOL.465 Yes Yes No 9 0.25 1 missing: not collected 6 days 36 weeks missing: not collected not applicable 46 cm 2635 g 12.45 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2363 grams vaginal SUBJECT21.STOOL.465 44.67335321 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 6 days missing: not collected 5 days not applicable days 5 days 3 days 292 6 urban biome human-associated habitat stool human-gut No 0 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.33 20 Calories per ounce 44.67335321 mL/kg/day 10 days neonate Homo sapiens 11712-21 9606 2 hours No Yes 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 1 doses 0 doses 0 doses Yes 0 doses College 1 doses 1 doses latino 0 mL/kg/day 824 mL 0 mL 0 mL 11712.SUBJECT21.STOOL.465.mzXML 11712.SUBJECT21.STOOL.465 not applicable 3 14053 fecal Singleton 2250 grams missing: not collected No Donor human milk No missing: not collected 14.61100569 -10.32258065 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes not applicable No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 5 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.650 2 Yes days 10 days SUBJECT30.ORAL.650 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.650 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 10 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.650.mzXML 11712.SUBJECT30.ORAL.650 not applicable 14 14329 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.667 2 Yes days 10 days SUBJECT30.SKIN.667 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.667 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 10 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.667.mzXML 11712.SUBJECT30.SKIN.667 not applicable 11 16894 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.684 2 Yes days 10 days SUBJECT30.STOOL.684 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.684 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 10 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.684.mzXML 11712.SUBJECT30.STOOL.684 not applicable 7 14080 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.695 2 Yes days 10 days SUBJECT31.ORAL.695 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.695 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 10 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL not_used 11712.SUBJECT31.ORAL.695 didn't inject 14 14326 not_used Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2124 2 Yes days 10 days SUBJECT31.SKIN.2124 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2124 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 10 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2124.mzXML 11712.SUBJECT31.SKIN.2124 not applicable 11 16919 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.707 2 Yes days 10 days SUBJECT31.STOOL.707 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.707 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 10 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.707.mzXML 11712.SUBJECT31.STOOL.707 not applicable 7 14124 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.ORAL.736 0 No days 10 days SUBJECT34.ORAL.736 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.ORAL.736 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 10 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.ORAL.736.mzXML 11712.SUBJECT34.ORAL.736 not applicable 2 13473 oral Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.SKIN.744 0 No days 10 days SUBJECT34.SKIN.744 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.SKIN.744 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 10 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.SKIN.744.mzXML 11712.SUBJECT34.SKIN.744 not applicable 12 16959 skin Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT34.STOOL.753 0 No days 10 days SUBJECT34.STOOL.753 Yes Yes Yes 9 0.28 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 46 cm 2450 g 11.58 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2302 grams vaginal SUBJECT34.STOOL.753 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days not applicable days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 78.83381924 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.61 22 Calories per ounce 13.11953353 mL/kg/day 10 days neonate Homo sapiens 11712-34 9606 1 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 33 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 13.11953353 mL/kg/day 0 mL 1352 mL 225 mL 11712.SUBJECT34.STOOL.753.mzXML 11712.SUBJECT34.STOOL.753 not applicable 7 14143 fecal Twin 2235 grams missing: not collected No Formula No missing: not collected 8.775510204 -6.040816327 85.7324033 missing: not collected No UCSDMI No Yes 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome Yes Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.ORAL.1235 2 Yes days 10 days SUBJECT37.ORAL.1235 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.ORAL.1235 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 10 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.ORAL.1235.mzXML 11712.SUBJECT37.ORAL.1235 not applicable 14 14316 oral Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.SKIN.1263 2 Yes days 10 days SUBJECT37.SKIN.1263 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.SKIN.1263 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 10 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.SKIN.1263.mzXML 11712.SUBJECT37.SKIN.1263 not applicable 13 17200 skin Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT37.STOOL.1236 2 Yes days 10 days SUBJECT37.STOOL.1236 Yes Yes Yes 8 0.22 1 missing: not collected 6 days 34 weeks missing: not collected not applicable 48 cm 2310 g 10.03 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2304 grams c-section SUBJECT37.STOOL.1236 51.36054422 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 7 days missing: not collected 5 days not applicable days 5 days 4 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 6.246134818 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.91 22 Calories per ounce 72.139765 mL/kg/day 10 days neonate Homo sapiens 11712-37 9606 19 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 10 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 20.77922078 mL/kg/day 830.5 mL 101 mL 336 mL 11712.SUBJECT37.STOOL.1236.mzXML 11712.SUBJECT37.STOOL.1236 not applicable 16 14307 fecal Singleton 2200 grams missing: not collected No Donor human milk No missing: not collected 4.761904762 -0.25974026 7.968441815 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes not applicable Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 6 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.847 0 No days 10 days SUBJECT4.ORAL.847 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 21:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.847 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 10 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.847.mzXML 11712.SUBJECT4.ORAL.847 not applicable 14 14366 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.858 0 No days 10 days SUBJECT4.SKIN.858 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 21:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.858 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 10 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.858.mzXML 11712.SUBJECT4.SKIN.858 not applicable 11 16880 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.869 0 No days 10 days SUBJECT4.STOOL.869 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 21:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.869 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 10 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.869.mzXML 11712.SUBJECT4.STOOL.869 not applicable 7 14114 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.889 5 Yes days 10 days SUBJECT40.ORAL.889 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.889 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.889.mzXML 11712.SUBJECT40.ORAL.889 not applicable 1 13366 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.910 5 Yes days 10 days SUBJECT40.SKIN.910 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.910 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.910.mzXML 11712.SUBJECT40.SKIN.910 not applicable 12 16948 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.928 5 Yes days 10 days SUBJECT40.STOOL.928 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.928 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 10 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.928.mzXML 11712.SUBJECT40.STOOL.928 not applicable 4 13674 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.941 0 No days 10 days SUBJECT41.ORAL.941 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:10:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.941 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 10 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.941.mzXML 11712.SUBJECT41.ORAL.941 not applicable 2 13511 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.957 0 No days 10 days SUBJECT41.SKIN.957 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:10:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.957 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 10 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.957.mzXML 11712.SUBJECT41.SKIN.957 not applicable 10 16805 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.973 0 No days 10 days SUBJECT41.STOOL.973 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.973 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 10 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.973.mzXML 11712.SUBJECT41.STOOL.973 not applicable 5 13729 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.992 0 No days 10 days SUBJECT42.ORAL.992 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.992 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 10 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.992.mzXML 11712.SUBJECT42.ORAL.992 not applicable 1 13446 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1008 0 No days 10 days SUBJECT42.SKIN.1008 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1008 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 10 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1008.mzXML 11712.SUBJECT42.SKIN.1008 not applicable 10 16783 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1023 0 No days 10 days SUBJECT42.STOOL.1023 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1023 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 10 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1023.mzXML 11712.SUBJECT42.STOOL.1023 not applicable 6 14176 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1027 5 Yes days 10 days SUBJECT43.ORAL.1027 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:49:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1027 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 10 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1027.mzXML 11712.SUBJECT43.ORAL.1027 not applicable 9 13922 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1047 5 Yes days 10 days SUBJECT43.SKIN.1047 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:50:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1047 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 10 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1047.mzXML 11712.SUBJECT43.SKIN.1047 not applicable 13 17179 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1068 5 Yes days 10 days SUBJECT43.STOOL.1068 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:25:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1068 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 10 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1068.mzXML 11712.SUBJECT43.STOOL.1068 not applicable 3 14058 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1118 2 Yes days 10 days SUBJECT8.ORAL.1118 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1118 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 10 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1118.mzXML 11712.SUBJECT8.ORAL.1118 not applicable 8 13868 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1135 2 Yes days 10 days SUBJECT8.SKIN.1135 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1135 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 10 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1135.mzXML 11712.SUBJECT8.SKIN.1135 not applicable 15 17046 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1152 2 Yes days 10 days SUBJECT8.STOOL.1152 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1152 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 10 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1152.mzXML 11712.SUBJECT8.STOOL.1152 not applicable 5 13726 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1175 2 Yes days 10 days SUBJECT9.ORAL.1175 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1175 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 10 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1175.mzXML 11712.SUBJECT9.ORAL.1175 not applicable 14 14359 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1194 2 Yes days 10 days SUBJECT9.SKIN.1194 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1194 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 10 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1194.mzXML 11712.SUBJECT9.SKIN.1194 not applicable 15 17066 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1214 2 Yes days 10 days SUBJECT9.STOOL.1214 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1214 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 10 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1214.mzXML 11712.SUBJECT9.STOOL.1214 not applicable 5 13689 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.ORAL.10 0 No days 11 days SUBJECT1.ORAL.10 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.ORAL.10 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 11 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.ORAL.10.mzXML 11712.SUBJECT1.ORAL.10 not applicable 14 14368 oral Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.SKIN.20 0 No days 11 days SUBJECT1.SKIN.20 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.SKIN.20 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 11 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.SKIN.20.mzXML 11712.SUBJECT1.SKIN.20 not applicable 11 16918 skin Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT1.STOOL.29 0 No days 11 days SUBJECT1.STOOL.29 Yes Yes Yes 8 0.34 1 missing: not collected 4 days 35 weeks missing: not collected not applicable 50 cm 2990 g 11.96 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2962 grams c-section SUBJECT1.STOOL.29 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 2 days missing: not collected 6 days not applicable days 6 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 50.45389393 mL/kg/day No Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.45 20 Calories per ounce 11.56235069 mL/kg/day 11 days neonate Homo sapiens 11712-1 9606 22 hours Yes No 3 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 11 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses Graduate school 0 doses 0 doses white 11.56235069 mL/kg/day 0 mL 1056 mL 242 mL 11712.SUBJECT1.STOOL.29.mzXML 11712.SUBJECT1.STOOL.29 not applicable 7 14115 fecal Singleton 2873 grams missing: not collected No Formula Yes missing: not collected 3.913043478 -0.936454849 81.3559322 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 1 days 2 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.73 0 No days 11 days SUBJECT12.ORAL.73 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.73 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 11 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.73.mzXML 11712.SUBJECT12.ORAL.73 not applicable 14 14346 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.88 0 No days 11 days SUBJECT12.SKIN.88 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.88 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 11 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.88.mzXML 11712.SUBJECT12.SKIN.88 not applicable 11 16901 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.164 0 No days 11 days SUBJECT16.ORAL.164 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.164 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 11 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.164.mzXML 11712.SUBJECT16.ORAL.164 not applicable 1 13433 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.182 0 No days 11 days SUBJECT16.SKIN.182 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.182 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 11 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.182.mzXML 11712.SUBJECT16.SKIN.182 not applicable 10 16801 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.197 0 No days 11 days SUBJECT16.STOOL.197 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.197 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 12 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.195.A.mzXML 11712.SUBJECT16.STOOL.195.A "Was a duplicate, verified which sample is which" 6 14155 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.220 7 Yes days 11 days SUBJECT17.ORAL.220 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.220 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 11 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.220.mzXML 11712.SUBJECT17.ORAL.220 not applicable 8 13816 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.242 7 Yes days 11 days SUBJECT17.SKIN.242 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.242 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 11 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.242.mzXML 11712.SUBJECT17.SKIN.242 not applicable 10 16807 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.264 7 Yes days 11 days SUBJECT17.STOOL.264 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.264 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 11 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.264.mzXML 11712.SUBJECT17.STOOL.264 not applicable 5 13740 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.279 2 Yes days 11 days SUBJECT18.ORAL.279 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.279 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 11 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.279.mzXML 11712.SUBJECT18.ORAL.279 not applicable 9 13930 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.301 2 Yes days 11 days SUBJECT18.SKIN.301 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.301 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 11 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.301.mzXML 11712.SUBJECT18.SKIN.301 not applicable 15 17043 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.323 2 Yes days 11 days SUBJECT18.STOOL.323 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.323 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 11 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.323.mzXML 11712.SUBJECT18.STOOL.323 not applicable 3 14029 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.343 0 No days 11 days SUBJECT19.ORAL.343 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.343 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.343.mzXML 11712.SUBJECT19.ORAL.343 not applicable 9 13960 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.358 0 No days 11 days SUBJECT19.SKIN.358 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.358 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.358.mzXML 11712.SUBJECT19.SKIN.358 not applicable 13 17202 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.374 0 No days 11 days SUBJECT19.STOOL.374 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:55:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.374 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.374.mzXML 11712.SUBJECT19.STOOL.374 not applicable 4 13665 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.400 0 No days 11 days SUBJECT20.ORAL.400 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.400 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.400.mzXML 11712.SUBJECT20.ORAL.400 not applicable 8 13824 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.414 0 No days 11 days SUBJECT20.SKIN.414 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.414 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.414.mzXML 11712.SUBJECT20.SKIN.414 not applicable 15 17104 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.430 0 No days 11 days SUBJECT20.STOOL.430 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.430 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.STOOL.430 didn't inject 3 13994 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.651 2 Yes days 11 days SUBJECT30.ORAL.651 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.651 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 11 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.651.mzXML 11712.SUBJECT30.ORAL.651 not applicable 14 14398 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.668 2 Yes days 11 days SUBJECT30.SKIN.668 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.668 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 11 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.668.mzXML 11712.SUBJECT30.SKIN.668 not applicable 11 16860 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.685 2 Yes days 11 days SUBJECT30.STOOL.685 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.685 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 11 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.685.mzXML 11712.SUBJECT30.STOOL.685 not applicable 7 14126 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.696 2 Yes days 11 days SUBJECT31.ORAL.696 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.696 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 11 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.696.mzXML 11712.SUBJECT31.ORAL.696 not applicable 14 14381 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.SKIN.2123 2 Yes days 11 days SUBJECT31.SKIN.2123 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.SKIN.2123 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 11 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.SKIN.2123.mzXML 11712.SUBJECT31.SKIN.2123 not applicable 11 16847 skin Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.708 2 Yes days 11 days SUBJECT31.STOOL.708 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.708 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 11 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.708.mzXML 11712.SUBJECT31.STOOL.708 not applicable 7 14084 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.848 0 No days 11 days SUBJECT4.ORAL.848 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.848 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 11 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.848.mzXML 11712.SUBJECT4.ORAL.848 not applicable 14 14357 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.859 0 No days 11 days SUBJECT4.SKIN.859 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.859 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 11 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.859.mzXML 11712.SUBJECT4.SKIN.859 not applicable 11 16862 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.870 0 No days 11 days SUBJECT4.STOOL.870 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.870 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 11 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL not_used 11712.SUBJECT4.STOOL.870 didn't inject 7 14089 not_used Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.890 5 Yes days 11 days SUBJECT40.ORAL.890 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.890 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.890.mzXML 11712.SUBJECT40.ORAL.890 not applicable 2 13530 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.911 5 Yes days 11 days SUBJECT40.SKIN.911 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.911 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.911.mzXML 11712.SUBJECT40.SKIN.911 not applicable 12 17014 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.929 5 Yes days 11 days SUBJECT40.STOOL.929 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.929 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 11 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.929.mzXML 11712.SUBJECT40.STOOL.929 not applicable 4 13673 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.942 0 No days 11 days SUBJECT41.ORAL.942 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.942 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 11 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.942.mzXML 11712.SUBJECT41.ORAL.942 not applicable 2 13509 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.958 0 No days 11 days SUBJECT41.SKIN.958 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.958 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 11 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.958.mzXML 11712.SUBJECT41.SKIN.958 not applicable 10 16742 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.974 0 No days 11 days SUBJECT41.STOOL.974 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.974 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 11 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.974.mzXML 11712.SUBJECT41.STOOL.974 not applicable 5 13728 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.980 0 No days 11 days SUBJECT42.ORAL.980 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.980 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 11 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.980.mzXML 11712.SUBJECT42.ORAL.980 not applicable 9 13901 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.995 0 No days 11 days SUBJECT42.SKIN.995 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.995 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 11 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.995.mzXML 11712.SUBJECT42.SKIN.995 not applicable 13 17151 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1011 0 No days 11 days SUBJECT42.STOOL.1011 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1011 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 11 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1011.mzXML 11712.SUBJECT42.STOOL.1011 not applicable 3 14067 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1028 5 Yes days 11 days SUBJECT43.ORAL.1028 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:07:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1028 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 11 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1028.mzXML 11712.SUBJECT43.ORAL.1028 not applicable 9 13902 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1048 5 Yes days 11 days SUBJECT43.SKIN.1048 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:06:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1048 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 11 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1048.mzXML 11712.SUBJECT43.SKIN.1048 not applicable 13 17215 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1069 5 Yes days 11 days SUBJECT43.STOOL.1069 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 0:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1069 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 11 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1069.mzXML 11712.SUBJECT43.STOOL.1069 not applicable 3 14046 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT57.STOOL.1345 0 No days 11 days SUBJECT57.STOOL.1345 Yes Yes Yes 9 0.29 2 missing: not collected 0 days 34 weeks missing: not collected not applicable 44 cm 1930 grams 9.97 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 1995 grams vaginal SUBJECT57.STOOL.1345 6.36565507 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 3 days missing: not collected 6 days 9 days 6 days 5 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 21.65062916 mL/kg/day Yes Yes USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.72 22 Calories per ounce 50.88823094 mL/kg/day 11 days neonate Homo sapiens 11712-57 9606 1 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 11 days 35 years 0 doses 10 doses 0 doses 2 doses No 0 doses High School 0 doses 0 doses Hispanic 44.52257587 mL/kg/day 86 mL 292.5 mL 601.5 mL 11712.SUBJECT57.STOOL.1345.mzXML 11712.SUBJECT57.STOOL.1345 not applicable 16 14250 fecal Singleton 1850 grams missing: not collected No Formula No missing: not collected 4.14507772 3.367875648 29.84693878 missing: not collected Yes RCHSD Yes Yes 11712 Formula Yes not applicable No missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 2 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT8.ORAL.1119 2 Yes days 11 days SUBJECT8.ORAL.1119 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1119 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 11 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1119.mzXML 11712.SUBJECT8.ORAL.1119 not applicable 8 13871 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1136 2 Yes days 11 days SUBJECT8.SKIN.1136 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1136 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 11 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1136.mzXML 11712.SUBJECT8.SKIN.1136 not applicable 15 17041 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1153 2 Yes days 11 days SUBJECT8.STOOL.1153 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1153 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 11 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1153.mzXML 11712.SUBJECT8.STOOL.1153 not applicable 5 13756 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1176 2 Yes days 11 days SUBJECT9.ORAL.1176 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1176 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 11 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1176.mzXML 11712.SUBJECT9.ORAL.1176 not applicable 8 13832 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1195 2 Yes days 11 days SUBJECT9.SKIN.1195 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1195 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 11 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1195.mzXML 11712.SUBJECT9.SKIN.1195 not applicable 15 17084 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1215 2 Yes days 11 days SUBJECT9.STOOL.1215 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1215 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 11 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1215.mzXML 11712.SUBJECT9.STOOL.1215 not applicable 6 14186 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.74 0 No days 12 days SUBJECT12.ORAL.74 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.74 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 12 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.74.mzXML 11712.SUBJECT12.ORAL.74 not applicable 14 14405 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.89 0 No days 12 days SUBJECT12.SKIN.89 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.89 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 12 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.89.mzXML 11712.SUBJECT12.SKIN.89 not applicable 11 16829 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.104 0 No days 12 days SUBJECT12.STOOL.104 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.104 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 12 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.104.mzXML 11712.SUBJECT12.STOOL.104 not applicable 5 13687 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.165 0 No days 12 days SUBJECT16.ORAL.165 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.165 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 12 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not_used 11712.SUBJECT16.ORAL.165 didn't inject 1 13369 not_used Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.183 0 No days 12 days SUBJECT16.SKIN.183 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.183 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 12 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.183.mzXML 11712.SUBJECT16.SKIN.183 not applicable 10 16802 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.198 0 No days 12 days SUBJECT16.STOOL.198 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.198 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 13 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.198.mzXML 11712.SUBJECT16.STOOL.198 not applicable 4 13620 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.221 7 Yes days 12 days SUBJECT17.ORAL.221 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.221 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 12 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.221.mzXML 11712.SUBJECT17.ORAL.221 not applicable 2 13522 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.243 7 Yes days 12 days SUBJECT17.SKIN.243 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.243 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 12 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.243.mzXML 11712.SUBJECT17.SKIN.243 not applicable 10 16752 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.265 7 Yes days 12 days SUBJECT17.STOOL.265 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.265 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 12 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.265.mzXML 11712.SUBJECT17.STOOL.265 not applicable 6 14203 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.280 2 Yes days 12 days SUBJECT18.ORAL.280 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.280 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 12 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.280.mzXML 11712.SUBJECT18.ORAL.280 not applicable 8 13788 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.302 2 Yes days 12 days SUBJECT18.SKIN.302 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.302 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 12 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.302.mzXML 11712.SUBJECT18.SKIN.302 not applicable 15 17086 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.324 2 Yes days 12 days SUBJECT18.STOOL.324 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.324 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 12 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.324.mzXML 11712.SUBJECT18.STOOL.324 not applicable 3 14002 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.344 0 No days 12 days SUBJECT19.ORAL.344 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.344 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.344.mzXML 11712.SUBJECT19.ORAL.344 not applicable 8 13818 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.359 0 No days 12 days SUBJECT19.SKIN.359 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.359 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.359.mzXML 11712.SUBJECT19.SKIN.359 not applicable 13 17192 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.1236 0 No days 12 days SUBJECT19.STOOL.1236 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.1236 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut missing: not collected 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.1236.mzXML 11712.SUBJECT19.STOOL.1236 not applicable 3 14001 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes Yes No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.401 0 No days 12 days SUBJECT20.ORAL.401 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.401 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.401.mzXML 11712.SUBJECT20.ORAL.401 not applicable 9 13895 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.415 0 No days 12 days SUBJECT20.SKIN.415 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.415 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.415.mzXML 11712.SUBJECT20.SKIN.415 not applicable 10 16799 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.431 0 No days 12 days SUBJECT20.STOOL.431 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.431 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.431.mzXML 11712.SUBJECT20.STOOL.431 not applicable 3 13982 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.652 2 Yes days 12 days SUBJECT30.ORAL.652 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.652 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 12 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.652.mzXML 11712.SUBJECT30.ORAL.652 not applicable 14 14361 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.669 2 Yes days 12 days SUBJECT30.SKIN.669 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.669 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 12 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.669.mzXML 11712.SUBJECT30.SKIN.669 not applicable 11 16896 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.686 2 Yes days 12 days SUBJECT30.STOOL.686 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.686 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 12 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.686.mzXML 11712.SUBJECT30.STOOL.686 not applicable 6 14205 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.ORAL.697 2 Yes days 12 days SUBJECT31.ORAL.697 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.ORAL.697 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 12 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.ORAL.697.mzXML 11712.SUBJECT31.ORAL.697 not applicable 14 14337 oral Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT31.STOOL.709 2 Yes days 12 days SUBJECT31.STOOL.709 Yes Yes Yes 9 0.23 1 missing: not collected 3 days 35 weeks missing: not collected not applicable 47 cm 2375 g 10.75 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2356 grams vaginal SUBJECT31.STOOL.709 73.80451128 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 9 days missing: not collected 5 days not applicable days 5 days 6 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.7 22 Calories per ounce 92 mL/kg/day 12 days neonate Homo sapiens 11712-31 9606 18 hours No No 4 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 40 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 0 doses Asian 18.19548872 mL/kg/day 1227 mL 0 mL 302.5 mL 11712.SUBJECT31.STOOL.709.mzXML 11712.SUBJECT31.STOOL.709 not applicable 7 14118 fecal Singleton 2202 grams missing: not collected Yes Donor human milk No missing: not collected 7.284210526 -0.8 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 8 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.ORAL.849 0 No days 12 days SUBJECT4.ORAL.849 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.ORAL.849 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 12 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.ORAL.849.mzXML 11712.SUBJECT4.ORAL.849 not applicable 14 14363 oral Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.SKIN.860 0 No days 12 days SUBJECT4.SKIN.860 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.SKIN.860 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 12 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.SKIN.860.mzXML 11712.SUBJECT4.SKIN.860 not applicable 11 16856 skin Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT4.STOOL.871 0 No days 12 days SUBJECT4.STOOL.871 Yes Yes Yes 9 0.27 1 missing: not collected 1 days 36 weeks missing: not collected not applicable 47.5 cm 1955 g 8.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2048 grams c-section SUBJECT4.STOOL.871 67.37303617 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 10 days missing: not collected 5 days 7 days 5 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.47 22 Calories per ounce 98.64815491 mL/kg/day 12 days neonate Homo sapiens 11712-4 9606 22 hours No No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 12 days 34 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 31.27511874 mL/kg/day 922 mL 0 mL 428 mL 11712.SUBJECT4.STOOL.871.mzXML 11712.SUBJECT4.STOOL.871 not applicable 6 14216 fecal Triplet 1875 grams missing: not collected No Donor human milk No missing: not collected 4.092071611 4.757033248 0 missing: not collected No UCSDMI No No 11712 Donor human milk Yes not applicable Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 9 days 1 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.891 5 Yes days 12 days SUBJECT40.ORAL.891 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.891 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.891.mzXML 11712.SUBJECT40.ORAL.891 not applicable 1 13378 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.912 5 Yes days 12 days SUBJECT40.SKIN.912 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.912 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.912.mzXML 11712.SUBJECT40.SKIN.912 not applicable 12 16934 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.930 5 Yes days 12 days SUBJECT40.STOOL.930 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.930 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 12 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.930.mzXML 11712.SUBJECT40.STOOL.930 not applicable 5 13759 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.943 0 No days 12 days SUBJECT41.ORAL.943 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.943 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 12 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.943.mzXML 11712.SUBJECT41.ORAL.943 not applicable 9 13947 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.959 0 No days 12 days SUBJECT41.SKIN.959 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.959 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 12 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.959.mzXML 11712.SUBJECT41.SKIN.959 not applicable 13 17206 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.975 0 No days 12 days SUBJECT41.STOOL.975 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.975 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 12 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.975.mzXML 11712.SUBJECT41.STOOL.975 not applicable 3 14044 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.981 0 No days 12 days SUBJECT42.ORAL.981 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.981 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 12 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.981.mzXML 11712.SUBJECT42.ORAL.981 not applicable 9 13958 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.996 0 No days 12 days SUBJECT42.SKIN.996 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.996 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 12 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.996.mzXML 11712.SUBJECT42.SKIN.996 not applicable 13 17230 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1012 0 No days 12 days SUBJECT42.STOOL.1012 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:50:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1012 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 12 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1012.mzXML 11712.SUBJECT42.STOOL.1012 not applicable 3 14057 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected Yes No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1029 5 Yes days 12 days SUBJECT43.ORAL.1029 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1029 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 12 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1029.mzXML 11712.SUBJECT43.ORAL.1029 not applicable 9 13970 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1049 5 Yes days 12 days SUBJECT43.SKIN.1049 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1049 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 12 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1049.mzXML 11712.SUBJECT43.SKIN.1049 not applicable 13 17162 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1070 5 Yes days 12 days SUBJECT43.STOOL.1070 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1070 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 12 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1070.mzXML 11712.SUBJECT43.STOOL.1070 not applicable 3 13983 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT44.STOOL.1239 2 Yes days 12 days SUBJECT44.STOOL.1239 Yes Yes Yes 9 0.41 1 missing: not collected 3 days 34 weeks missing: not collected not applicable 47.5 cm 2520 g 11.17 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2655 grams vaginal SUBJECT44.STOOL.1239 33.84353741 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 6 days 12 days 6 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.1 22 Calories per ounce 61.16780045 mL/kg/day 12 days neonate Homo sapiens 11712-44 9606 28 hours Yes No 5 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses hispanic 27.32426304 mL/kg/day 597 mL 0 mL 482 mL 11712.SUBJECT44.STOOL.1239.mzXML 11712.SUBJECT44.STOOL.1239 not applicable 16 14251 fecal Singleton 4285 grams missing: not collected Yes Donor human milk Yes missing: not collected 9.325396825 5.357142857 0 missing: not collected No UCSDMI No No 11712 Formula Yes 9 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 9 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1120 2 Yes days 12 days SUBJECT8.ORAL.1120 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1120 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 12 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1120.mzXML 11712.SUBJECT8.ORAL.1120 not applicable 1 13388 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1137 2 Yes days 12 days SUBJECT8.SKIN.1137 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1137 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 12 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1137.mzXML 11712.SUBJECT8.SKIN.1137 not applicable 15 17081 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1154 2 Yes days 12 days SUBJECT8.STOOL.1154 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 19:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1154 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 12 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1154.mzXML 11712.SUBJECT8.STOOL.1154 not applicable 4 13601 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1177 2 Yes days 12 days SUBJECT9.ORAL.1177 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1177 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 12 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1177.mzXML 11712.SUBJECT9.ORAL.1177 not applicable 8 13795 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1196 2 Yes days 12 days SUBJECT9.SKIN.1196 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1196 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 12 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1196.mzXML 11712.SUBJECT9.SKIN.1196 not applicable 15 17115 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1216 2 Yes days 12 days SUBJECT9.STOOL.1216 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 15:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1216 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 12 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1216.mzXML 11712.SUBJECT9.STOOL.1216 not applicable 4 13675 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.75 0 No days 13 days SUBJECT12.ORAL.75 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.75 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 13 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.75.mzXML 11712.SUBJECT12.ORAL.75 not applicable 14 14322 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.90 0 No days 13 days SUBJECT12.SKIN.90 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.90 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 13 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.90.mzXML 11712.SUBJECT12.SKIN.90 not applicable 11 16855 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.105 0 No days 13 days SUBJECT12.STOOL.105 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.105 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 13 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.105.mzXML 11712.SUBJECT12.STOOL.105 not applicable 6 14195 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.166 0 No days 13 days SUBJECT16.ORAL.166 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.166 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 13 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.166.mzXML 11712.SUBJECT16.ORAL.166 not applicable 8 13802 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.184 0 No days 13 days SUBJECT16.SKIN.184 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.184 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 13 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.184.mzXML 11712.SUBJECT16.SKIN.184 not applicable 13 17175 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.199 0 No days 13 days SUBJECT16.STOOL.199 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.199 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 14 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not_used 11712.SUBJECT16.STOOL.199 didn't inject 3 14071 not_used Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.222 7 Yes days 13 days SUBJECT17.ORAL.222 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.222 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 13 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.207.B.mzXML 11712.SUBJECT17.ORAL.207.B "Was a duplicate, verified which sample is which" 1 13447 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.244 7 Yes days 13 days SUBJECT17.SKIN.244 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.244 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 13 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.244.mzXML 11712.SUBJECT17.SKIN.244 not applicable 10 16814 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.266 7 Yes days 13 days SUBJECT17.STOOL.266 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.266 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 13 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.266.mzXML 11712.SUBJECT17.STOOL.266 not applicable 6 14238 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.281 2 Yes days 13 days SUBJECT18.ORAL.281 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.281 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 13 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.281.mzXML 11712.SUBJECT18.ORAL.281 not applicable 9 13950 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.303 2 Yes days 13 days SUBJECT18.SKIN.303 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 3:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.303 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 13 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.303.mzXML 11712.SUBJECT18.SKIN.303 not applicable 15 17072 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.325 2 Yes days 13 days SUBJECT18.STOOL.325 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.325 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 13 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.325.mzXML 11712.SUBJECT18.STOOL.325 not applicable 3 14026 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.345 0 No days 13 days SUBJECT19.ORAL.345 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.345 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.345.mzXML 11712.SUBJECT19.ORAL.345 not applicable 8 13790 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.360 0 No days 13 days SUBJECT19.SKIN.360 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.360 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.360.mzXML 11712.SUBJECT19.SKIN.360 not applicable 15 17034 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.375 0 No days 13 days SUBJECT19.STOOL.375 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.375 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.375.mzXML 11712.SUBJECT19.STOOL.375 not applicable 4 13646 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.402 0 No days 13 days SUBJECT20.ORAL.402 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.402 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.402.mzXML 11712.SUBJECT20.ORAL.402 not applicable 8 13849 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.416 0 No days 13 days SUBJECT20.SKIN.416 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.416 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.416.mzXML 11712.SUBJECT20.SKIN.416 not applicable 15 17092 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.432 0 No days 13 days SUBJECT20.STOOL.432 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.432 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.432.mzXML 11712.SUBJECT20.STOOL.432 not applicable 6 14153 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.653 2 Yes days 13 days SUBJECT30.ORAL.653 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:13:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.653 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 13 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.653.mzXML 11712.SUBJECT30.ORAL.653 not applicable 14 14360 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.670 2 Yes days 13 days SUBJECT30.SKIN.670 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:13:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.670 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 13 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.670.mzXML 11712.SUBJECT30.SKIN.670 not applicable 11 16835 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.687 2 Yes days 13 days SUBJECT30.STOOL.687 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.687 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 13 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.687.mzXML 11712.SUBJECT30.STOOL.687 not applicable 7 14093 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.872 5 Yes days 13 days SUBJECT40.ORAL.872 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.872 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.872.mzXML 11712.SUBJECT40.ORAL.872 not applicable 2 13493 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.892 5 Yes days 13 days SUBJECT40.SKIN.892 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.892 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.892.mzXML 11712.SUBJECT40.SKIN.892 not applicable 10 16747 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.913 5 Yes days 13 days SUBJECT40.STOOL.913 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.913 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 13 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.913.mzXML 11712.SUBJECT40.STOOL.913 not applicable 6 14151 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.932 0 No days 13 days SUBJECT41.ORAL.932 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:05:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.932 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 13 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.932.mzXML 11712.SUBJECT41.ORAL.932 not applicable 9 13969 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.948 0 No days 13 days SUBJECT41.SKIN.948 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:05:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.948 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 13 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.948.mzXML 11712.SUBJECT41.SKIN.948 not applicable 13 17182 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.964 0 No days 13 days SUBJECT41.STOOL.964 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.964 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 13 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.964.mzXML 11712.SUBJECT41.STOOL.964 not applicable 3 14056 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1013 0 No days 13 days SUBJECT42.STOOL.1013 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1013 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 13 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1013.mzXML 11712.SUBJECT42.STOOL.1013 not applicable 3 14043 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1030 5 Yes days 13 days SUBJECT43.ORAL.1030 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1030 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 13 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1030.mzXML 11712.SUBJECT43.ORAL.1030 not applicable 9 13945 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1050 5 Yes days 13 days SUBJECT43.SKIN.1050 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1050 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 13 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1050.mzXML 11712.SUBJECT43.SKIN.1050 not applicable 13 17167 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1071 5 Yes days 13 days SUBJECT43.STOOL.1071 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1071 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 13 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1071.mzXML 11712.SUBJECT43.STOOL.1071 not applicable 3 14034 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1121 2 Yes days 13 days SUBJECT8.ORAL.1121 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1121 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 13 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL not_used 11712.SUBJECT8.ORAL.1121 didn't inject 1 13404 not_used Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1138 2 Yes days 13 days SUBJECT8.SKIN.1138 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1138 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 13 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1138.mzXML 11712.SUBJECT8.SKIN.1138 not applicable 12 16975 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1155 2 Yes days 13 days SUBJECT8.STOOL.1155 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 17:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1155 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 13 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1155.mzXML 11712.SUBJECT8.STOOL.1155 not applicable 5 13758 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1178 2 Yes days 13 days SUBJECT9.ORAL.1178 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 1:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1178 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 13 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1178.mzXML 11712.SUBJECT9.ORAL.1178 not applicable 8 13860 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1197 2 Yes days 13 days SUBJECT9.SKIN.1197 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 1:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1197 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 13 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1197.mzXML 11712.SUBJECT9.SKIN.1197 not applicable 11 16840 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1217 2 Yes days 13 days SUBJECT9.STOOL.1217 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 1:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1217 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 13 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1217.mzXML 11712.SUBJECT9.STOOL.1217 not applicable 4 13624 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.76 0 No days 14 days SUBJECT12.ORAL.76 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.76 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 14 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.76.mzXML 11712.SUBJECT12.ORAL.76 not applicable 14 14323 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.91 0 No days 14 days SUBJECT12.SKIN.91 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.91 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 14 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.91.mzXML 11712.SUBJECT12.SKIN.91 not applicable 12 16955 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.106 0 No days 14 days SUBJECT12.STOOL.106 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:34:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.106 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 14 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.106.mzXML 11712.SUBJECT12.STOOL.106 not applicable 5 13683 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.167 0 No days 14 days SUBJECT16.ORAL.167 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.167 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 14 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.167.mzXML 11712.SUBJECT16.ORAL.167 not applicable 8 13843 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.185 0 No days 14 days SUBJECT16.SKIN.185 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.185 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 14 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.185.mzXML 11712.SUBJECT16.SKIN.185 not applicable 13 17168 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.200 0 No days 14 days SUBJECT16.STOOL.200 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.200 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 15 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2121.mzXML 11712.SUBJECT16.STOOL.2121 "MS filename was misnamed, does match this sample." 4 13634 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL223 7 Yes days 14 days SUBJECT17.ORAL223 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL223 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 14 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL223.mzXML 11712.SUBJECT17.ORAL223 not applicable 1 13435 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.245 7 Yes days 14 days SUBJECT17.SKIN.245 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.245 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 14 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.245.mzXML 11712.SUBJECT17.SKIN.245 not applicable 10 16764 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.267 7 Yes days 14 days SUBJECT17.STOOL.267 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.267 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 14 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.267.mzXML 11712.SUBJECT17.STOOL.267 not applicable 5 13706 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.282 2 Yes days 14 days SUBJECT18.ORAL.282 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.282 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 14 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.282.mzXML 11712.SUBJECT18.ORAL.282 not applicable 9 13892 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.304 2 Yes days 14 days SUBJECT18.SKIN.304 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.304 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 14 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.304.mzXML 11712.SUBJECT18.SKIN.304 not applicable 13 17158 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.326 2 Yes days 14 days SUBJECT18.STOOL.326 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.326 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 14 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.326.mzXML 11712.SUBJECT18.STOOL.326 not applicable 4 13632 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.346 0 No days 14 days SUBJECT19.ORAL.346 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.346 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.346.mzXML 11712.SUBJECT19.ORAL.346 not applicable 8 13853 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.361 0 No days 14 days SUBJECT19.SKIN.361 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.361 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.361.mzXML 11712.SUBJECT19.SKIN.361 not applicable 13 17228 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.376 0 No days 14 days SUBJECT19.STOOL.376 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.376 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.376.mzXML 11712.SUBJECT19.STOOL.376 not applicable 3 14013 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.403 0 No days 14 days SUBJECT20.ORAL.403 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.403 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.403.mzXML 11712.SUBJECT20.ORAL.403 not applicable 2 13558 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.417 0 No days 14 days SUBJECT20.SKIN.417 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.417 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.417.mzXML 11712.SUBJECT20.SKIN.417 not applicable 10 16786 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.433 0 No days 14 days SUBJECT20.STOOL.433 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.433 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.433.mzXML 11712.SUBJECT20.STOOL.433 not applicable 5 13739 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.642 2 Yes days 14 days SUBJECT30.ORAL.642 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.642 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 14 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.642.mzXML 11712.SUBJECT30.ORAL.642 not applicable 14 14411 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.659 2 Yes days 14 days SUBJECT30.SKIN.659 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.659 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 14 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.659.mzXML 11712.SUBJECT30.SKIN.659 not applicable 11 16907 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.676 2 Yes days 14 days SUBJECT30.STOOL.676 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.676 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 14 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.676.mzXML 11712.SUBJECT30.STOOL.676 not applicable 7 14100 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.873 5 Yes days 14 days SUBJECT40.ORAL.873 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:10:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.873 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.873.mzXML 11712.SUBJECT40.ORAL.873 not applicable 1 13382 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.893 5 Yes days 14 days SUBJECT40.SKIN.893 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:10:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.893 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.893.mzXML 11712.SUBJECT40.SKIN.893 not applicable 10 16735 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.914 5 Yes days 14 days SUBJECT40.STOOL.914 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.914 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 14 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.914.mzXML 11712.SUBJECT40.STOOL.914 not applicable 6 14211 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.933 0 No days 14 days SUBJECT41.ORAL.933 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.933 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 14 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.933.mzXML 11712.SUBJECT41.ORAL.933 not applicable 9 13890 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.949 0 No days 14 days SUBJECT41.SKIN.949 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.949 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 14 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.949.mzXML 11712.SUBJECT41.SKIN.949 not applicable 13 17194 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.965 0 No days 14 days SUBJECT41.STOOL.965 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.965 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 14 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.965.mzXML 11712.SUBJECT41.STOOL.965 not applicable 3 13997 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.982 0 No days 14 days SUBJECT42.ORAL.982 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:12:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.982 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 14 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.982.mzXML 11712.SUBJECT42.ORAL.982 not applicable 9 13924 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.997 0 No days 14 days SUBJECT42.SKIN.997 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:13:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.997 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 14 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.997.mzXML 11712.SUBJECT42.SKIN.997 not applicable 13 17163 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1031 5 Yes days 14 days SUBJECT43.ORAL.1031 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1031 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 14 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1031.mzXML 11712.SUBJECT43.ORAL.1031 not applicable 9 13925 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1051 5 Yes days 14 days SUBJECT43.SKIN.1051 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1051 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 14 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1051.mzXML 11712.SUBJECT43.SKIN.1051 not applicable 13 17142 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1072 5 Yes days 14 days SUBJECT43.STOOL.1072 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:20:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1072 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 14 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1072.mzXML 11712.SUBJECT43.STOOL.1072 not applicable 3 13985 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1122 2 Yes days 14 days SUBJECT8.ORAL.1122 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1122 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 14 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1122.mzXML 11712.SUBJECT8.ORAL.1122 not applicable 1 13428 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1139 2 Yes days 14 days SUBJECT8.SKIN.1139 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1139 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 14 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1139.mzXML 11712.SUBJECT8.SKIN.1139 not applicable 15 17133 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1156 2 Yes days 14 days SUBJECT8.STOOL.1156 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:44:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1156 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 14 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1156.mzXML 11712.SUBJECT8.STOOL.1156 not applicable 5 13768 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1179 2 Yes days 14 days SUBJECT9.ORAL.1179 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1179 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 14 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1179.mzXML 11712.SUBJECT9.ORAL.1179 not applicable 8 13807 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1198 2 Yes days 14 days SUBJECT9.SKIN.1198 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1198 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 14 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1198.mzXML 11712.SUBJECT9.SKIN.1198 not applicable 11 16864 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1218 2 Yes days 14 days SUBJECT9.STOOL.1218 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1218 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 14 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1218.mzXML 11712.SUBJECT9.STOOL.1218 not applicable 4 13650 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.77 0 No days 15 days SUBJECT12.ORAL.77 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.77 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 15 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.77.mzXML 11712.SUBJECT12.ORAL.77 not applicable 14 14347 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.92 0 No days 15 days SUBJECT12.SKIN.92 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.92 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 15 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.92.mzXML 11712.SUBJECT12.SKIN.92 not applicable 12 16993 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.1228 0 No days 15 days SUBJECT12.STOOL.1228 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.1228 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 15 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.1228.mzXML 11712.SUBJECT12.STOOL.1228 not applicable 5 13736 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.168 0 No days 15 days SUBJECT16.ORAL.168 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.168 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 15 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.168.mzXML 11712.SUBJECT16.ORAL.168 not applicable 8 13855 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.186 0 No days 15 days SUBJECT16.SKIN.186 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.186 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 15 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.186.mzXML 11712.SUBJECT16.SKIN.186 not applicable 15 17058 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.201 0 No days 15 days SUBJECT16.STOOL.201 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.201 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 16 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.201.mzXML 11712.SUBJECT16.STOOL.201 not applicable 4 13668 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.208 7 Yes days 15 days SUBJECT17.ORAL.208 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.208 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 15 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.208.mzXML 11712.SUBJECT17.ORAL.208 not applicable 2 13556 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.230 7 Yes days 15 days SUBJECT17.SKIN.230 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.230 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 15 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.230.mzXML 11712.SUBJECT17.SKIN.230 not applicable 10 16729 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.252 7 Yes days 15 days SUBJECT17.STOOL.252 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.252 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 15 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.252.mzXML 11712.SUBJECT17.STOOL.252 not applicable 5 13742 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.283 2 Yes days 15 days SUBJECT18.ORAL.283 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.283 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 15 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.283.mzXML 11712.SUBJECT18.ORAL.283 not applicable 9 13971 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.305 2 Yes days 15 days SUBJECT18.SKIN.305 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.305 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 15 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.305.mzXML 11712.SUBJECT18.SKIN.305 not applicable 13 17171 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.327 2 Yes days 15 days SUBJECT18.STOOL.327 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.327 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 15 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.327.mzXML 11712.SUBJECT18.STOOL.327 not applicable 4 13656 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.347 0 No days 15 days SUBJECT19.ORAL.347 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.347 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.347.mzXML 11712.SUBJECT19.ORAL.347 not applicable 8 13867 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.362 0 No days 15 days SUBJECT19.SKIN.362 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.362 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.362.mzXML 11712.SUBJECT19.SKIN.362 not applicable 15 17083 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.377 0 No days 15 days SUBJECT19.STOOL.377 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.377 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.377.mzXML 11712.SUBJECT19.STOOL.377 not applicable 3 14025 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.404 0 No days 15 days SUBJECT20.ORAL.404 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.404 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.404.mzXML 11712.SUBJECT20.ORAL.404 not applicable 2 13534 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.418 0 No days 15 days SUBJECT20.SKIN.418 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.418 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.418.mzXML 11712.SUBJECT20.SKIN.418 not applicable 10 16726 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.434 0 No days 15 days SUBJECT20.STOOL.434 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.434 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL not_used 11712.SUBJECT20.STOOL.434 didn't inject 6 14167 not_used Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.643 2 Yes days 15 days SUBJECT30.ORAL.643 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.643 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 15 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.643.mzXML 11712.SUBJECT30.ORAL.643 not applicable 14 14349 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.660 2 Yes days 15 days SUBJECT30.SKIN.660 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.660 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 15 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.660.mzXML 11712.SUBJECT30.SKIN.660 not applicable 11 16857 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.677 2 Yes days 15 days SUBJECT30.STOOL.677 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.677 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 15 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.677.mzXML 11712.SUBJECT30.STOOL.677 not applicable 7 14102 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.874 5 Yes days 15 days SUBJECT40.ORAL.874 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.874 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.874.mzXML 11712.SUBJECT40.ORAL.874 not applicable 2 13481 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.894 5 Yes days 15 days SUBJECT40.SKIN.894 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.894 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.894.mzXML 11712.SUBJECT40.SKIN.894 not applicable 10 16778 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.915 5 Yes days 15 days SUBJECT40.STOOL.915 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.915 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 15 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.915.mzXML 11712.SUBJECT40.STOOL.915 not applicable 6 14199 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.934 0 No days 15 days SUBJECT41.ORAL.934 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.934 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 15 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.934.mzXML 11712.SUBJECT41.ORAL.934 not applicable 9 13913 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.950 0 No days 15 days SUBJECT41.SKIN.950 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.950 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 15 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.950.mzXML 11712.SUBJECT41.SKIN.950 not applicable 13 17170 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.1225 0 No days 15 days SUBJECT41.STOOL.1225 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.1225 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 15 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.1225.mzXML 11712.SUBJECT41.STOOL.1225 not applicable 3 14045 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.983 0 No days 15 days SUBJECT42.ORAL.983 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.983 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 15 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.983.mzXML 11712.SUBJECT42.ORAL.983 not applicable 9 13935 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.998 0 No days 15 days SUBJECT42.SKIN.998 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.998 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 15 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.998.mzXML 11712.SUBJECT42.SKIN.998 not applicable 13 17218 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1032 5 Yes days 15 days SUBJECT43.ORAL.1032 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:16:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1032 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 15 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1032.mzXML 11712.SUBJECT43.ORAL.1032 not applicable 9 13923 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1052 5 Yes days 15 days SUBJECT43.SKIN.1052 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:17:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1052 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 15 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1052.mzXML 11712.SUBJECT43.SKIN.1052 not applicable 13 17223 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1073 5 Yes days 15 days SUBJECT43.STOOL.1073 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:22:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1073 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 15 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL not_used 11712.SUBJECT43.STOOL.1073 didn't inject 3 13995 not_used Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1123 2 Yes days 15 days SUBJECT8.ORAL.1123 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1123 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 15 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1123.mzXML 11712.SUBJECT8.ORAL.1123 not applicable 1 13444 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1140 2 Yes days 15 days SUBJECT8.SKIN.1140 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1140 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 15 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1140.mzXML 11712.SUBJECT8.SKIN.1140 not applicable 12 16974 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1157 2 Yes days 15 days SUBJECT8.STOOL.1157 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1157 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 15 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1157.mzXML 11712.SUBJECT8.STOOL.1157 not applicable 5 13702 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1180 2 Yes days 15 days SUBJECT9.ORAL.1180 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1180 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 15 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1180.mzXML 11712.SUBJECT9.ORAL.1180 not applicable 2 13543 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1199 2 Yes days 15 days SUBJECT9.SKIN.1199 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1199 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 15 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1199.mzXML 11712.SUBJECT9.SKIN.1199 not applicable 11 16888 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1219 2 Yes days 15 days SUBJECT9.STOOL.1219 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1219 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 15 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1219.mzXML 11712.SUBJECT9.STOOL.1219 not applicable 5 13688 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.1229.A 0 No days 16 days SUBJECT12.ORAL.1229.A Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.1229.A 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 16 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.1229.A.mzXML 11712.SUBJECT12.ORAL.1229.A true duplicate 14 14400 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.1229.B 0 No days 16 days SUBJECT12.ORAL.1229.B Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected Missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.1229.B 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 16 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.1229.B.mzXML 11712.SUBJECT12.ORAL.1229.B true duplicate 1 13403 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.1230.A 0 No days 16 days SUBJECT12.SKIN.1230.A Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.1230.A 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 1 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.1230.A.mzXML 11712.SUBJECT12.SKIN.1230.A true duplicate 12 16931 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.1230.B 0 No days 16 days SUBJECT12.SKIN.1230.B Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 23:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.1230.B 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 1 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.1230.B.mzXML 11712.SUBJECT12.SKIN.1230.B true duplicate 11 16867 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.103 0 No days 16 days SUBJECT12.STOOL.103 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.103 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 16 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.103.mzXML 11712.SUBJECT12.STOOL.103 not applicable 4 13635 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.1231.A 0 No days 16 days SUBJECT12.STOOL.1231.A Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:35:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.1231.A 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 16 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.1231.A.mzXML 11712.SUBJECT12.STOOL.1231.A true duplicate 5 13712 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.1231.B 0 No days 16 days SUBJECT12.STOOL.1231.B Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected Missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.1231.B 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 16 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.1231.B.mzXML 11712.SUBJECT12.STOOL.1231.B true duplicate 7 14092 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.169 0 No days 16 days SUBJECT16.ORAL.169 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.169 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 16 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.169.mzXML 11712.SUBJECT16.ORAL.169 not applicable 8 13866 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.187 0 No days 16 days SUBJECT16.SKIN.187 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:20:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.187 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 16 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.187.mzXML 11712.SUBJECT16.SKIN.187 not applicable 13 17178 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.209 7 Yes days 16 days SUBJECT17.ORAL.209 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.209 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 16 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL not_used 11712.SUBJECT17.ORAL.209 didn't inject 1 13395 not_used Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.231 7 Yes days 16 days SUBJECT17.SKIN.231 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.231 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 16 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.231.mzXML 11712.SUBJECT17.SKIN.231 not applicable 10 16765 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.253 7 Yes days 16 days SUBJECT17.STOOL.253 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.253 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 16 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.253.mzXML 11712.SUBJECT17.STOOL.253 not applicable 4 13644 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.284 2 Yes days 16 days SUBJECT18.ORAL.284 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.284 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 16 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.284.mzXML 11712.SUBJECT18.ORAL.284 not applicable 9 13946 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.306 2 Yes days 16 days SUBJECT18.SKIN.306 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.306 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 16 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.306.mzXML 11712.SUBJECT18.SKIN.306 not applicable 13 17184 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.328 2 Yes days 16 days SUBJECT18.STOOL.328 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.328 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 16 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.328.mzXML 11712.SUBJECT18.STOOL.328 not applicable 4 13594 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT19.ORAL.348 0 No days 16 days SUBJECT19.ORAL.348 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.ORAL.348 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat oral human-oral No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.ORAL.348.mzXML 11712.SUBJECT19.ORAL.348 not applicable 8 13804 oral Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.SKIN.363 0 No days 16 days SUBJECT19.SKIN.363 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.SKIN.363 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat skin human-skin No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.SKIN.363.mzXML 11712.SUBJECT19.SKIN.363 not applicable 13 17214 skin Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT19.STOOL.378 0 No days 16 days SUBJECT19.STOOL.378 Yes No No 7 0.15 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46 cm 2860 g 13.52 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2995 grams c-section SUBJECT19.STOOL.378 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 4 days 292 1 urban biome human-associated habitat stool human-gut No 112.5374625 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.4 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-19 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 2253 mL 0 mL 11712.SUBJECT19.STOOL.378.mzXML 11712.SUBJECT19.STOOL.378 not applicable 4 13658 fecal Twin 2556 grams missing: not collected No Formula No missing: not collected 10.62937063 4.72027972 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.ORAL.405 0 No days 16 days SUBJECT20.ORAL.405 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.ORAL.405 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.ORAL.405.mzXML 11712.SUBJECT20.ORAL.405 not applicable 2 13510 oral Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.SKIN.419 0 No days 16 days SUBJECT20.SKIN.419 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.SKIN.419 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.SKIN.419.mzXML 11712.SUBJECT20.SKIN.419 not applicable 10 16777 skin Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT20.STOOL.435 0 No days 16 days SUBJECT20.STOOL.435 Yes No No 6 0.16 1 missing: not collected 0 days 36 weeks missing: not collected not applicable 46.5 cm 2405 g 11.12 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2545 grams c-section SUBJECT20.STOOL.435 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 4 days 12 days 4 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 108.9397089 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.35 22 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-20 9606 1 hours Yes No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 16 days 27 years 0 doses 0 doses 1 doses 0 doses No 0 doses High School 0 doses 0 doses black 0 mL/kg/day 0 mL 1834 mL 0 mL 11712.SUBJECT20.STOOL.435.mzXML 11712.SUBJECT20.STOOL.435 not applicable 6 14201 fecal Twin 2204 grams missing: not collected No Formula Yes missing: not collected 8.357588358 5.821205821 100 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 1 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.644 2 Yes days 16 days SUBJECT30.ORAL.644 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.644 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 16 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.ORAL.644.mzXML 11712.SUBJECT30.ORAL.644 not applicable 14 14396 oral Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.661 2 Yes days 16 days SUBJECT30.SKIN.661 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.661 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 16 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.661.mzXML 11712.SUBJECT30.SKIN.661 not applicable 11 16859 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.678 2 Yes days 16 days SUBJECT30.STOOL.678 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.678 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 16 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.678.mzXML 11712.SUBJECT30.STOOL.678 not applicable 7 14107 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.875 5 Yes days 16 days SUBJECT40.ORAL.875 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.875 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.875.mzXML 11712.SUBJECT40.ORAL.875 not applicable 2 13545 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.895 5 Yes days 16 days SUBJECT40.SKIN.895 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.895 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.895.mzXML 11712.SUBJECT40.SKIN.895 not applicable 10 16791 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.916 5 Yes days 16 days SUBJECT40.STOOL.916 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.916 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 16 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.916.mzXML 11712.SUBJECT40.STOOL.916 not applicable 6 14150 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT41.ORAL.935 0 No days 16 days SUBJECT41.ORAL.935 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.ORAL.935 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 16 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.ORAL.935.mzXML 11712.SUBJECT41.ORAL.935 not applicable 9 13914 oral Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.SKIN.951 0 No days 16 days SUBJECT41.SKIN.951 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.SKIN.951 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 16 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.SKIN.951.mzXML 11712.SUBJECT41.SKIN.951 not applicable 13 17157 skin Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT41.STOOL.967 0 No days 16 days SUBJECT41.STOOL.967 Yes Yes Yes 9 0.26 1 missing: not collected 0 days 34 weeks missing: not collected not applicable 43.5 cm 1530 g 8.09 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 1860 grams c-section SUBJECT41.STOOL.967 15.96638655 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 5 days missing: not collected 7 days 5 days 7 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 1.213818861 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.45 24 Calories per ounce 34.73389356 mL/kg/day 16 days neonate Homo sapiens 11712-41 9606 2 hours No No 8 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 16 days 32 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 18.767507 mL/kg/day 171 mL 13 mL 201 mL 11712.SUBJECT41.STOOL.967.mzXML 11712.SUBJECT41.STOOL.967 not applicable 3 14065 fecal Singleton 1460 grams missing: not collected No Formula No missing: not collected 4.575163399 21.56862745 3.376623377 missing: not collected No UCSDMI No No 11712 Formula Yes not applicable No missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 4 days 0 days MD Microbiome No Formula missing: not collected Formula Donor human milk and Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.984 0 No days 16 days SUBJECT42.ORAL.984 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.984 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 16 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL not_used 11712.SUBJECT42.ORAL.984 didn't inject 9 13889 not_used Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.999 0 No days 16 days SUBJECT42.SKIN.999 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.999 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 16 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.999.mzXML 11712.SUBJECT42.SKIN.999 not applicable 13 17176 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1014 0 No days 16 days SUBJECT42.STOOL.1014 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1014 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 16 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1014.mzXML 11712.SUBJECT42.STOOL.1014 not applicable 3 14055 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1033 5 Yes days 16 days SUBJECT43.ORAL.1033 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:13:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1033 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 16 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1033.mzXML 11712.SUBJECT43.ORAL.1033 not applicable 9 13959 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1053 5 Yes days 16 days SUBJECT43.SKIN.1053 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:13:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1053 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 16 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1053.mzXML 11712.SUBJECT43.SKIN.1053 not applicable 13 17191 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1074 5 Yes days 16 days SUBJECT43.STOOL.1074 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:13:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1074 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 16 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1074.mzXML 11712.SUBJECT43.STOOL.1074 not applicable 3 14007 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT44.STOOL.1240 2 Yes days 16 days SUBJECT44.STOOL.1240 Yes Yes Yes 9 0.41 1 missing: not collected 3 days 34 weeks missing: not collected not applicable 47.5 cm 2520 g 11.17 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:50:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2655 grams vaginal SUBJECT44.STOOL.1240 33.84353741 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 6 days 12 days 6 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 1.1 22 Calories per ounce 61.16780045 mL/kg/day 16 days neonate Homo sapiens 11712-44 9606 28 hours Yes No 5 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses hispanic 27.32426304 mL/kg/day 597 mL 0 mL 482 mL 11712.SUBJECT44.STOOL.1240.mzXML 11712.SUBJECT44.STOOL.1240 not applicable 16 14273 fecal Singleton 4285 grams missing: not collected Yes Donor human milk Yes missing: not collected 9.325396825 5.357142857 0 missing: not collected No UCSDMI No No 11712 Formula Yes 9 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 9 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT45.STOOL.1242 0 No days 16 days SUBJECT45.STOOL.1242 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 43 cm 1965 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2140 grams vaginal SUBJECT45.STOOL.1242 34.46019629 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 15 days missing: not collected 5 days 8 days 5 days 4 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Yes USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 22 Calories per ounce 58.81497637 mL/kg/day 16 days neonate Homo sapiens 11712-45 9606 9 hours No No 5 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 31 years 0 doses 0 doses 0 doses 0 doses No 2 doses College 0 doses 0 doses Asian 24.35478008 mL/kg/day 474 mL 0 mL 335 mL 11712.SUBJECT45.STOOL.1242.mzXML 11712.SUBJECT45.STOOL.1242 not applicable 16 14265 fecal Singleton 1840 grams missing: not collected Yes Donor human milk No missing: not collected 6.361323155 8.905852417 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected no 408170 15 days 9 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1124 2 Yes days 16 days SUBJECT8.ORAL.1124 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1124 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 16 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1124.mzXML 11712.SUBJECT8.ORAL.1124 not applicable 8 13810 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1141 2 Yes days 16 days SUBJECT8.SKIN.1141 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1141 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 16 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1141.mzXML 11712.SUBJECT8.SKIN.1141 not applicable 12 17011 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1158 2 Yes days 16 days SUBJECT8.STOOL.1158 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 6:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1158 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 16 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1158.mzXML 11712.SUBJECT8.STOOL.1158 not applicable 5 13732 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1181 2 Yes days 16 days SUBJECT9.ORAL.1181 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1181 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 16 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1181.mzXML 11712.SUBJECT9.ORAL.1181 not applicable 8 13856 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1200 2 Yes days 16 days SUBJECT9.SKIN.1200 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1200 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 16 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1200.mzXML 11712.SUBJECT9.SKIN.1200 not applicable 15 17091 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1220 2 Yes days 16 days SUBJECT9.STOOL.1220 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1220 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 16 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1220.mzXML 11712.SUBJECT9.STOOL.1220 not applicable 5 13749 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.ORAL.78 0 No days 17 days SUBJECT12.ORAL.78 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 4:49:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.ORAL.78 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 17 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.ORAL.78.mzXML 11712.SUBJECT12.ORAL.78 not applicable 1 13380 oral Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.SKIN.93 0 No days 17 days SUBJECT12.SKIN.93 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 4:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.SKIN.93 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 17 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.SKIN.93.mzXML 11712.SUBJECT12.SKIN.93 not applicable 12 16942 skin Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT12.STOOL.107 0 No days 17 days SUBJECT12.STOOL.107 Yes Yes Yes 9 0.31 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 46 cm 2500 g 11.81 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 4:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 2750 grams vaginal SUBJECT12.STOOL.107 44.65714286 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 12 days missing: not collected 5 days 11 days 5 days 6 days 292 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.71 22 Calories per ounce 85.48571429 mL/kg/day 17 days neonate Homo sapiens 11712-12 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 34 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 4 doses latino 40.82857143 mL/kg/day 781.5 mL 0 mL 714.5 mL 11712.SUBJECT12.STOOL.107.mzXML 11712.SUBJECT12.STOOL.107 not applicable 4 13587 fecal Singleton 2298 grams missing: not collected Yes Donor human milk No missing: not collected 8.08 10 0 missing: not collected Yes UCSDMI No Yes 11712 Donor human milk Yes 3 No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 11 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.161 0 No days 17 days SUBJECT16.ORAL.161 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.161 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 17 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.161.mzXML 11712.SUBJECT16.ORAL.161 not applicable 8 13831 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.178 0 No days 17 days SUBJECT16.SKIN.178 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.178 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 17 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.178.mzXML 11712.SUBJECT16.SKIN.178 not applicable 13 17174 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.2116 0 No days 17 days SUBJECT16.STOOL.2116 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.2116 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 17 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2116.mzXML 11712.SUBJECT16.STOOL.2116 not applicable 3 14004 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.210 7 Yes days 17 days SUBJECT17.ORAL.210 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.210 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 17 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.210.mzXML 11712.SUBJECT17.ORAL.210 not applicable 1 13436 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.232 7 Yes days 17 days SUBJECT17.SKIN.232 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.232 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 17 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.232.mzXML 11712.SUBJECT17.SKIN.232 not applicable 13 17229 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected Yes No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.254 7 Yes days 17 days SUBJECT17.STOOL.254 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.254 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 17 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.254.mzXML 11712.SUBJECT17.STOOL.254 not applicable 4 13645 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.285 2 Yes days 17 days SUBJECT18.ORAL.285 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.285 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 17 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL not_used 11712.SUBJECT18.ORAL.285 "little bit of something, but no real signal" 9 13903 not_used Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.307 2 Yes days 17 days SUBJECT18.SKIN.307 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.307 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 17 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.307.mzXML 11712.SUBJECT18.SKIN.307 not applicable 13 17146 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.329 2 Yes days 17 days SUBJECT18.STOOL.329 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.329 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 17 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.329.mzXML 11712.SUBJECT18.STOOL.329 not applicable 4 13667 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.ORAL.645 2 Yes days 17 days SUBJECT30.ORAL.645 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.ORAL.645 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 17 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL not_used 11712.SUBJECT30.ORAL.645 no TIC 14 14373 not_used Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.SKIN.662 2 Yes days 17 days SUBJECT30.SKIN.662 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.SKIN.662 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 17 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.SKIN.662.mzXML 11712.SUBJECT30.SKIN.662 not applicable 11 16893 skin Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT30.STOOL.679 2 Yes days 17 days SUBJECT30.STOOL.679 Yes Yes Yes 9 0.25 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 44 cm 2015 g 10.41 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2246 grams vaginal SUBJECT30.STOOL.679 79.47536335 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 16 days missing: not collected 5 days 9 days 5 days 5 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.51 22 Calories per ounce 79.47536335 mL/kg/day 17 days neonate Homo sapiens 11712-30 9606 15 hours Yes No 2 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 0 mL/kg/day 1121 mL 0 mL 0 mL 11712.SUBJECT30.STOOL.679.mzXML 11712.SUBJECT30.STOOL.679 not applicable 6 14158 fecal Singleton 1914 grams missing: not collected Yes Donor human milk No missing: not collected 5.012406948 11.46401985 0 missing: not collected No UCSDMI No Yes 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 15 days 2 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.876 5 Yes days 17 days SUBJECT40.ORAL.876 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 17:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.876 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 17 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL not_used 11712.SUBJECT40.ORAL.876 didn't inject 1 13370 not_used Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.896 5 Yes days 17 days SUBJECT40.SKIN.896 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 17:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.896 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 17 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.896.mzXML 11712.SUBJECT40.SKIN.896 not applicable 10 16793 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.917 5 Yes days 17 days SUBJECT40.STOOL.917 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 20:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.917 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 17 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.920.B.mzXML 11712.SUBJECT40.STOOL.920.B "Was a duplicate, verified which sample is which" 7 14144 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT42.ORAL.985 0 No days 17 days SUBJECT42.ORAL.985 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.ORAL.985 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat oral human-oral No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 17 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.ORAL.985.mzXML 11712.SUBJECT42.ORAL.985 not applicable 9 13896 oral Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.SKIN.1000 0 No days 17 days SUBJECT42.SKIN.1000 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.SKIN.1000 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat skin human-skin No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 17 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.SKIN.1000.mzXML 11712.SUBJECT42.SKIN.1000 not applicable 13 17145 skin Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT42.STOOL.1015 0 No days 17 days SUBJECT42.STOOL.1015 Yes Yes Yes 9 not applicable 1 missing: not collected 0 days 35 weeks missing: not collected not applicable 50.5 cm 2765 g 10.84 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 2:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3035 grams vaginal SUBJECT42.STOOL.1015 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 5 days 12 days 5 days 3 days 105 0 urban biome human-associated habitat stool human-gut No 32.80805993 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 55.799535 mL/kg/day 17 days neonate Homo sapiens 11712-42 9606 1 hours Yes No 2 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 17 days 37 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 55.799535 mL/kg/day 0 mL 635 mL 1080 mL 11712.SUBJECT42.STOOL.1015.mzXML 11712.SUBJECT42.STOOL.1015 not applicable 3 14019 fecal Singleton 2590 grams missing: not collected Yes Formula No missing: not collected 6.329113924 9.764918626 37.02623907 missing: not collected No UCSDMI No No 11712 Formula Yes 1 No missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 0 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1034 5 Yes days 17 days SUBJECT43.ORAL.1034 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 13:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1034 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 17 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1034.mzXML 11712.SUBJECT43.ORAL.1034 not applicable 9 13933 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1054 5 Yes days 17 days SUBJECT43.SKIN.1054 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 13:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1054 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 17 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1054.mzXML 11712.SUBJECT43.SKIN.1054 not applicable 13 17211 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1075 5 Yes days 17 days SUBJECT43.STOOL.1075 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1075 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 17 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1075.mzXML 11712.SUBJECT43.STOOL.1075 not applicable 3 14022 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.ORAL.1125 2 Yes days 17 days SUBJECT8.ORAL.1125 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.ORAL.1125 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 17 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.ORAL.1125.mzXML 11712.SUBJECT8.ORAL.1125 not applicable 2 13477 oral Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.SKIN.1142 2 Yes days 17 days SUBJECT8.SKIN.1142 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 6:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.SKIN.1142 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 17 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.SKIN.1142.mzXML 11712.SUBJECT8.SKIN.1142 not applicable 15 17038 skin Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT8.STOOL.1159 2 Yes days 17 days SUBJECT8.STOOL.1159 Yes Yes Yes 8 0.25 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 48 cm 2450 g 10.63 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:15:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2765 grams vaginal SUBJECT8.STOOL.1159 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 3 days missing: not collected 7 days 5 days 7 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 26.23906706 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.46 22 Calories per ounce 8.571428571 mL/kg/day 17 days neonate Homo sapiens 11712-8 9606 39 hours No No 5 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 17 days 30 years 0 doses 0 doses 0 doses 0 doses No 0 doses College 0 doses 1 doses latino 8.571428571 mL/kg/day 0 mL 450 mL 147 mL 11712.SUBJECT8.STOOL.1159.mzXML 11712.SUBJECT8.STOOL.1159 not applicable 5 13750 fecal Singleton 2370 grams missing: not collected Yes Formula Yes missing: not collected 3.265306122 12.85714286 75.37688442 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 0 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 7 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1227 2 Yes days 17 days SUBJECT9.ORAL.1227 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1227 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 17 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1227.mzXML 11712.SUBJECT9.ORAL.1227 not applicable 9 13894 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1201 2 Yes days 17 days SUBJECT9.SKIN.1201 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1201 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 17 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1201.mzXML 11712.SUBJECT9.SKIN.1201 not applicable 11 16912 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1221 2 Yes days 17 days SUBJECT9.STOOL.1221 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1221 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 17 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1221.mzXML 11712.SUBJECT9.STOOL.1221 not applicable 7 14087 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.1233 0 No days 18 days SUBJECT16.ORAL.1233 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 3:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.1233 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 18 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.1233.mzXML 11712.SUBJECT16.ORAL.1233 not applicable 8 13854 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.2114 0 No days 18 days SUBJECT16.SKIN.2114 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.2114 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 18 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL not_used 11712.SUBJECT16.SKIN.2114 didn't inject 15 17060 not_used Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.2117 0 No days 18 days SUBJECT16.STOOL.2117 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.2117 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 18 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2117.mzXML 11712.SUBJECT16.STOOL.2117 not applicable 3 14069 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.211 7 Yes days 18 days SUBJECT17.ORAL.211 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.211 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 18 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.211.mzXML 11712.SUBJECT17.ORAL.211 not applicable 9 13951 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.233 7 Yes days 18 days SUBJECT17.SKIN.233 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.233 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 18 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.233.mzXML 11712.SUBJECT17.SKIN.233 not applicable 13 17232 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.255 7 Yes days 18 days SUBJECT17.STOOL.255 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:45:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.255 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 18 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.255.mzXML 11712.SUBJECT17.STOOL.255 not applicable 4 13655 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.286 2 Yes days 18 days SUBJECT18.ORAL.286 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.286 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 18 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.286.mzXML 11712.SUBJECT18.ORAL.286 not applicable 9 13962 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.308 2 Yes days 18 days SUBJECT18.SKIN.308 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.308 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 18 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.308.mzXML 11712.SUBJECT18.SKIN.308 not applicable 13 17220 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.330 2 Yes days 18 days SUBJECT18.STOOL.330 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 7:10:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.330 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 18 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.330.mzXML 11712.SUBJECT18.STOOL.330 not applicable 4 13619 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.877 5 Yes days 18 days SUBJECT40.ORAL.877 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.877 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 18 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.877.mzXML 11712.SUBJECT40.ORAL.877 not applicable 2 13469 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.897 5 Yes days 18 days SUBJECT40.SKIN.897 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.897 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 18 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.897.mzXML 11712.SUBJECT40.SKIN.897 not applicable 10 16808 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.918 5 Yes days 18 days SUBJECT40.STOOL.918 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.918 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 18 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.918.mzXML 11712.SUBJECT40.STOOL.918 not applicable 6 14223 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1035 5 Yes days 18 days SUBJECT43.ORAL.1035 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1035 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 18 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1035.mzXML 11712.SUBJECT43.ORAL.1035 not applicable 9 13948 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1055 5 Yes days 18 days SUBJECT43.SKIN.1055 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1055 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 18 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1055.mzXML 11712.SUBJECT43.SKIN.1055 not applicable 13 17150 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1076 5 Yes days 18 days SUBJECT43.STOOL.1076 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:42:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1076 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 18 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1076.mzXML 11712.SUBJECT43.STOOL.1076 not applicable 3 14021 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1182 2 Yes days 18 days SUBJECT9.ORAL.1182 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1182 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 18 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1182.mzXML 11712.SUBJECT9.ORAL.1182 not applicable 8 13787 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1202 2 Yes days 18 days SUBJECT9.SKIN.1202 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1202 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 18 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1202.mzXML 11712.SUBJECT9.SKIN.1202 not applicable 15 17131 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1222 2 Yes days 18 days SUBJECT9.STOOL.1222 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1222 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 18 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1222.A.mzXML 11712.SUBJECT9.STOOL.1222.A "There were two samples, but was not a duplicate. Picked best sample." 3 14016 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL1222 2 Yes days 18 days SUBJECT9.STOOL1222 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL1222 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 18 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL not applicable not applicable not applicable not applicable not applicable not applicable Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Stool human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.2112 0 No days 19 days SUBJECT16.ORAL.2112 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.2112 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 19 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.2112.mzXML 11712.SUBJECT16.ORAL.2112 not applicable 8 13826 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.179 0 No days 19 days SUBJECT16.SKIN.179 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.179 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 19 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.179.mzXML 11712.SUBJECT16.SKIN.179 not applicable 13 17144 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.2118 0 No days 19 days SUBJECT16.STOOL.2118 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.2118 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 19 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2118.mzXML 11712.SUBJECT16.STOOL.2118 not applicable 3 13989 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.212 7 Yes days 19 days SUBJECT17.ORAL.212 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.212 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 19 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.212.mzXML 11712.SUBJECT17.ORAL.212 not applicable 9 13905 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.234 7 Yes days 19 days SUBJECT17.SKIN.234 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.234 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 19 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.234.mzXML 11712.SUBJECT17.SKIN.234 not applicable 13 17219 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.256 7 Yes days 19 days SUBJECT17.STOOL.256 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.256 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 19 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.256.mzXML 11712.SUBJECT17.STOOL.256 not applicable 4 13585 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.287 2 Yes days 19 days SUBJECT18.ORAL.287 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.287 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 19 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.287.mzXML 11712.SUBJECT18.ORAL.287 not applicable 9 13921 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.309 2 Yes days 19 days SUBJECT18.SKIN.309 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.309 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 19 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.309.mzXML 11712.SUBJECT18.SKIN.309 not applicable 13 17207 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.331 2 Yes days 19 days SUBJECT18.STOOL.331 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:40:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.331 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 19 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.331.mzXML 11712.SUBJECT18.STOOL.331 not applicable 4 13629 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.878 5 Yes days 19 days SUBJECT40.ORAL.878 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 15:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.878 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 19 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.878.mzXML 11712.SUBJECT40.ORAL.878 not applicable 1 13394 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.898 5 Yes days 19 days SUBJECT40.SKIN.898 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 15:40:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.898 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 19 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.898.mzXML 11712.SUBJECT40.SKIN.898 not applicable 10 16759 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.919 5 Yes days 19 days SUBJECT40.STOOL.919 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 11:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.919 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 19 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.919.mzXML 11712.SUBJECT40.STOOL.919 not applicable 6 14163 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1036 5 Yes days 19 days SUBJECT43.ORAL.1036 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1036 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 19 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1036.mzXML 11712.SUBJECT43.ORAL.1036 not applicable 9 13956 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1056 5 Yes days 19 days SUBJECT43.SKIN.1056 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:30:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1056 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 19 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1056.mzXML 11712.SUBJECT43.SKIN.1056 not applicable 13 17227 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1077 5 Yes days 19 days SUBJECT43.STOOL.1077 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1077 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 19 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.STOOL.1077.mzXML 11712.SUBJECT43.STOOL.1077 not applicable 3 14009 fecal Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.ORAL.2113 0 No days 20 days SUBJECT16.ORAL.2113 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.ORAL.2113 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat oral human-oral missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 20 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.ORAL.2113.mzXML 11712.SUBJECT16.ORAL.2113 not applicable 8 13881 oral Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Oral Shae human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.SKIN.2115 0 No days 20 days SUBJECT16.SKIN.2115 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.SKIN.2115 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat skin human-skin missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 20 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.SKIN.2115.mzXML 11712.SUBJECT16.SKIN.2115 not applicable 15 17113 skin Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Skin Shae human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.2119 0 No days 20 days SUBJECT16.STOOL.2119 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.2119 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 20 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2119.mzXML 11712.SUBJECT16.STOOL.2119 not applicable 3 14061 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.213 7 Yes days 20 days SUBJECT17.ORAL.213 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.213 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 20 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.213.mzXML 11712.SUBJECT17.ORAL.213 not applicable 9 13928 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.235 7 Yes days 20 days SUBJECT17.SKIN.235 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.235 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 20 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.235.mzXML 11712.SUBJECT17.SKIN.235 not applicable 13 17217 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.257 7 Yes days 20 days SUBJECT17.STOOL.257 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 9:05:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.257 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 20 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.257.mzXML 11712.SUBJECT17.STOOL.257 not applicable 3 14068 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.288 2 Yes days 20 days SUBJECT18.ORAL.288 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.288 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 20 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.288.mzXML 11712.SUBJECT18.ORAL.288 not applicable 9 13953 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.310 2 Yes days 20 days SUBJECT18.SKIN.310 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.310 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 20 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.310.mzXML 11712.SUBJECT18.SKIN.310 not applicable 13 17143 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.332 2 Yes days 20 days SUBJECT18.STOOL.332 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.332 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 20 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.332.mzXML 11712.SUBJECT18.STOOL.332 not applicable 4 13580 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.879 5 Yes days 20 days SUBJECT40.ORAL.879 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.879 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 20 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.879.mzXML 11712.SUBJECT40.ORAL.879 not applicable 2 13521 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.899 5 Yes days 20 days SUBJECT40.SKIN.899 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.899 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 20 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.899.mzXML 11712.SUBJECT40.SKIN.899 not applicable 10 16771 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.STOOL.920 5 Yes days 20 days SUBJECT40.STOOL.920 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.STOOL.920 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat stool human-gut No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 20 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.STOOL.920.A.mzXML 11712.SUBJECT40.STOOL.920.A "Was a duplicate, verified which sample is which" 6 14187 fecal Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1037 5 Yes days 20 days SUBJECT43.ORAL.1037 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1037 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 20 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1037.mzXML 11712.SUBJECT43.ORAL.1037 not applicable 9 13936 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1057 5 Yes days 20 days SUBJECT43.SKIN.1057 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1057 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 20 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1057.mzXML 11712.SUBJECT43.SKIN.1057 not applicable 13 17187 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.STOOL.1078 5 Yes days 20 days SUBJECT43.STOOL.1078 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:15:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.STOOL.1078 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 20 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL not_used 11712.SUBJECT43.STOOL.1078 didn't inject 3 14033 not_used Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.ORAL.1183 2 Yes days 20 days SUBJECT9.ORAL.1183 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1183 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 20 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1183.mzXML 11712.SUBJECT9.ORAL.1183 not applicable 8 13792 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1203 2 Yes days 20 days SUBJECT9.SKIN.1203 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1203 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 20 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1203.mzXML 11712.SUBJECT9.SKIN.1203 not applicable 15 17087 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1223 2 Yes days 20 days SUBJECT9.STOOL.1223 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 13:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1223 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 20 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1223.mzXML 11712.SUBJECT9.STOOL.1223 not applicable 3 14006 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT16.STOOL.2120 0 No days 21 days SUBJECT16.STOOL.2120 Yes Yes No 8 0.27 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2105 g 9.95 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected missing: not collected 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2564 grams c-section SUBJECT16.STOOL.2120 49.94910078 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 17 days missing: not collected 6 days 6 days 6 days 4 days 292 7 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.38 22 Calories per ounce 64.99491008 mL/kg/day 21 days neonate Homo sapiens 11712-16 9606 25 hours No No 6 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 20 days 33 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 15.0458093 mL/kg/day 736 mL 0 mL 221.7 mL 11712.SUBJECT16.STOOL.2120.mzXML 11712.SUBJECT16.STOOL.2120 not applicable 3 14018 fecal Singleton 2051 grams missing: not collected Yes Donor human milk No missing: not collected 2.565320665 21.80522565 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 4 Yes missing: not collected Yes missing: not collected No Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 16 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.214 7 Yes days 21 days SUBJECT17.ORAL.214 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.214 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 21 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.214.mzXML 11712.SUBJECT17.ORAL.214 not applicable 9 13949 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.236 7 Yes days 21 days SUBJECT17.SKIN.236 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.236 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 21 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.236.mzXML 11712.SUBJECT17.SKIN.236 not applicable 13 17155 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.258 7 Yes days 21 days SUBJECT17.STOOL.258 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 10:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.258 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 21 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.258.mzXML 11712.SUBJECT17.STOOL.258 not applicable 4 13669 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.289 2 Yes days 21 days SUBJECT18.ORAL.289 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.289 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 21 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.289.mzXML 11712.SUBJECT18.ORAL.289 not applicable 9 13910 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.311 2 Yes days 21 days SUBJECT18.SKIN.311 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.311 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 21 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.311.mzXML 11712.SUBJECT18.SKIN.311 not applicable 13 17183 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.333 2 Yes days 21 days SUBJECT18.STOOL.333 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 14:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.333 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 21 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.333.mzXML 11712.SUBJECT18.STOOL.333 not applicable 4 13584 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No No Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT40.ORAL.880 5 Yes days 21 days SUBJECT40.ORAL.880 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.ORAL.880 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat oral human-oral No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 21 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.ORAL.880.mzXML 11712.SUBJECT40.ORAL.880 not applicable 2 13479 oral Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT40.SKIN.900 5 Yes days 21 days SUBJECT40.SKIN.900 Yes No No 9 0.72 1 missing: not collected 4 days 34 weeks missing: not collected not applicable 48.5 cm 2255 g 9.59 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 18:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 3260 grams c-section SUBJECT40.SKIN.900 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 11 days 6 days 2 days 105 2 urban biome human-associated habitat skin human-skin No 70.19322141 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.89 24 Calories per ounce 0 mL/kg/day 21 days neonate Homo sapiens 11712-40 9606 21 hours No Yes 7 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 35 days 39 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses black 0 mL/kg/day 0 mL 1108 mL 0 mL 11712.SUBJECT40.SKIN.900.mzXML 11712.SUBJECT40.SKIN.900 not applicable 10 16796 skin Singleton 2190 grams missing: not collected Yes Formula Yes missing: not collected 2.88248337 44.56762749 100 missing: not collected Yes UCSDMI No No 11712 Formula Yes 0 Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 16 days MD Microbiome No Formula missing: not collected Formula Formula missing: not collected missing: not collected not applicable 11712.SUBJECT43.ORAL.1038 5 Yes days 21 days SUBJECT43.ORAL.1038 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 7:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.ORAL.1038 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 21 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.ORAL.1038.mzXML 11712.SUBJECT43.ORAL.1038 not applicable 9 13887 oral Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 447426 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT43.SKIN.1058 5 Yes days 21 days SUBJECT43.SKIN.1058 Yes Yes Yes 4 not applicable 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 46 cm 2280 g 10.77 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 7:45:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3548 grams c-section SUBJECT43.SKIN.1058 7.456140351 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 44 days missing: not collected 13 days 14 days 13 days 6 days 105 0 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable 22 Calories per ounce 16.97994987 mL/kg/day 21 days neonate Homo sapiens 11712-43 9606 25 hours Yes No 13 days missing: not collected 32.875 missing: not collected not applicable missing: not collected not applicable -117.225 54 days 44 years 0 doses 0 doses 1 doses 0 doses No 0 doses College 0 doses 0 doses white 9.523809524 mL/kg/day 119 mL 0 mL 152 mL 11712.SUBJECT43.SKIN.1058.mzXML 11712.SUBJECT43.SKIN.1058 not applicable 13 17235 skin Singleton 1910 grams missing: not collected Yes Donor human milk Yes missing: not collected 16.22807018 55.61403509 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 0 Yes missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 539655 43 days 5 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT55.STOOL.1271 2 Yes days 21 days SUBJECT55.STOOL.1271 Yes Yes Yes 7 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 45 cm 2275 grams 11.23 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 3:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2605 grams vaginal SUBJECT55.STOOL.1271 53.06122449 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 10 days 4 days 3 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 95.94976452 mL/kg/day 21 days neonate Homo sapiens 11712-55 9606 8 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 42.88854003 mL/kg/day 845 mL 0 mL 683 mL 11712.SUBJECT55.STOOL.1271.mzXML 11712.SUBJECT55.STOOL.1271 not applicable 16 14256 fecal Twin 2100 grams missing: not collected Yes Donor human milk Yes missing: not collected 7.692307692 14.50549451 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 6 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 15 days 6 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT56.STOOL.1274 0 No days 21 days SUBJECT56.STOOL.1274 Yes Yes Yes 9 0.25 2 missing: not collected 1 days 34 weeks missing: not collected not applicable 44 cm 2290 grams 11.83 kg/m2 0 UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 5:00:00 2017 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2580 grams vaginal SUBJECT56.STOOL.1274 62.75733001 mL/kg/day missing: not collected not applicable missing: not collected not applicable No missing: not collected 16 days missing: not collected 4 days 13 days 4 days 7 days 105 0 urban biome human-associated habitat stool human-gut missing: not collected 0 mL/kg/day Yes Unknown USA:CA:San Diego missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.43 24 Calories per ounce 103.7429819 mL/kg/day 21 days neonate Homo sapiens 11712-56 9606 3 hours No No 3 Days missing: not collected 32.878 missing: not collected not applicable missing: not collected not applicable -117.225 22 days 38 years 0 doses 0 doses 0 doses 0 doses No 0 doses Graduate school 0 doses 6 doses Asian 40.9856519 mL/kg/day 1006 mL 0 mL 657 mL 11712.SUBJECT56.STOOL.1274.mzXML 11712.SUBJECT56.STOOL.1274 not applicable 16 14297 fecal Twin 2090 grams missing: not collected Yes Donor human milk Yes missing: not collected 8.733624454 12.66375546 0 missing: not collected Yes RCHSD Yes Yes 11712 Donor human milk Yes 1 Yes missing: not collected missing: not collected missing: not collected missing: not collected Stool Shae human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Female Female missing: not collected missing: not collected No 408170 15 days 3 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected not applicable not applicable 11712.SUBJECT9.ORAL.1184 2 Yes days 21 days SUBJECT9.ORAL.1184 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.ORAL.1184 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 21 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.ORAL.1184.mzXML 11712.SUBJECT9.ORAL.1184 not applicable 8 13836 oral Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.SKIN.1204 2 Yes days 21 days SUBJECT9.SKIN.1204 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:50:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.SKIN.1204 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 21 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.SKIN.1204.mzXML 11712.SUBJECT9.SKIN.1204 not applicable 15 17103 skin Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT9.STOOL.1224 2 Yes days 21 days SUBJECT9.STOOL.1224 Yes Yes No 9 0.17 1 missing: not collected 1 days 34 weeks missing: not collected not applicable 46 cm 2045 g 9.66 kg/m2 Yes UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 12:30:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2589 grams vaginal SUBJECT9.STOOL.1224 73.41949005 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 15 days missing: not collected 6 days 9 days 6 days 3 days 292 1 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 74.11805798 mL/kg/day 21 days neonate Homo sapiens 11712-9 9606 2 hours No No 0 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 22 days 18 years 0 doses 0 doses 0 doses 0 doses No 0 doses High School 0 doses 0 doses latino 0.698567936 mL/kg/day 1051 mL 0 mL 10 mL 11712.SUBJECT9.STOOL.1224.mzXML 11712.SUBJECT9.STOOL.1224 not applicable 5 13773 fecal Singleton 1956 grams missing: not collected Yes Donor human milk No missing: not collected 4.35207824 26.60146699 0 missing: not collected Yes UCSDMI No No 11712 Donor human milk Yes 7 No missing: not collected No missing: not collected Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 14 days 0 days MD Microbiome No Donor human milk missing: not collected Donor human milk Donor human milk and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.ORAL.215 7 Yes days 22 days SUBJECT17.ORAL.215 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.ORAL.215 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat oral human-oral No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 22 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.ORAL.215.mzXML 11712.SUBJECT17.ORAL.215 not applicable 9 13973 oral Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No Yes Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 447426 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.SKIN.237 7 Yes days 22 days SUBJECT17.SKIN.237 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.SKIN.237 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat skin human-skin No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 22 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.SKIN.237.mzXML 11712.SUBJECT17.SKIN.237 not applicable 13 17180 skin Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No Yes Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 539655 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT17.STOOL.259 7 Yes days 22 days SUBJECT17.STOOL.259 Yes Yes Yes 8 0.18 1 missing: not collected 2 days 36 weeks missing: not collected not applicable 48 cm 3265 g 14.17 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 8:00:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No Yes 3680 grams vaginal SUBJECT17.STOOL.259 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 22 days missing: not collected 9 days 7 days 9 days 3 days 292 3 urban biome human-associated habitat stool human-gut No 0 mL/kg/day Yes No USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.32 22 Calories per ounce 6.409975935 mL/kg/day 22 days neonate Homo sapiens 11712-17 9606 20 hours No Yes 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 25 days 27 years 0 doses 0 doses 0 doses 0 doses No 0 doses Unknown 0 doses 0 doses white 6.409975935 mL/kg/day 0 mL 0 mL 146.5 mL 11712.SUBJECT17.STOOL.259.mzXML 11712.SUBJECT17.STOOL.259 not applicable 4 13608 fecal Singleton 3230 grams missing: not collected Yes Formula Yes missing: not collected 1.071975498 12.71056662 0 missing: not collected Yes UCSDMI No Yes 11712 Formula Yes 1 Yes missing: not collected No Yes Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected Yes 408170 16 days 11 days MD Microbiome No Formula missing: not collected Formula Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.ORAL.268 2 Yes days 22 days SUBJECT18.ORAL.268 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:oral cavity UBERON:oral cavity UBERON:oral cavity missing: not collected missing: not collected 16:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.ORAL.268 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat oral human-oral No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 22 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.ORAL.268.mzXML 11712.SUBJECT18.ORAL.268 not applicable 9 13919 oral Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No Yes Oral Stephanie human oral metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 447426 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.SKIN.290 2 Yes days 22 days SUBJECT18.SKIN.290 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:integument UBERON:skin UBERON:axilla missing: not collected missing: not collected 16:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.SKIN.290 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat skin human-skin No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 22 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.SKIN.290.mzXML 11712.SUBJECT18.SKIN.290 not applicable 13 17172 skin Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No Yes Skin Stephanie human skin metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 539655 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable 11712.SUBJECT18.STOOL.312 2 Yes days 22 days SUBJECT18.STOOL.312 Yes Yes Yes 5 0.29 1 missing: not collected 2 days 34 weeks missing: not collected not applicable 47 cm 1925 g 8.71 kg/m2 No UBERON:gut UBERON:feces UBERON:gut missing: not collected missing: not collected 16:25:00 2016 missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable not applicable not applicable No No 2778 grams c-section SUBJECT18.STOOL.312 0 mL/kg/day missing: not collected not applicable missing: not collected not applicable Yes missing: not collected 1 days missing: not collected 6 days 4 days 6 days 4 days 292 0 urban biome human-associated habitat stool human-gut No 46.41929499 mL/kg/day Yes Unknown USA:CA missing: not collected missing: not collected missing: not collected not applicable missing: not collected not applicable 0.92 22 Calories per ounce 12.43042672 mL/kg/day 22 days neonate Homo sapiens 11712-18 9606 8 hours No No 7 days missing: not collected 32.754684 missing: not collected not applicable missing: not collected not applicable -117.166142 26 days 35 years 0 doses 0 doses 1 doses 0 doses No 0 doses Unknown 0 doses 6 doses latino 12.43042672 mL/kg/day 0 mL 625.5 mL 167.5 mL 11712.SUBJECT18.STOOL.312.mzXML 11712.SUBJECT18.STOOL.312 not applicable 4 13607 fecal Singleton 1867 grams missing: not collected Yes Formula No missing: not collected 3.012987013 44.31168831 78.8776797 missing: not collected Yes UCSDMI No No 11712 Formula Yes 3 Yes missing: not collected No No Yes Stool Stephanie human gut metagenome missing: not collected missing: not collected missing: not collected missing: not collected Male Male missing: not collected missing: not collected No 408170 0 days 4 days MD Microbiome No Formula missing: not collected Formula Formula and Mother's milk missing: not collected missing: not collected not applicable